Scaffold Ga0114905_1102198

Overview

Basic Information

• Taxon OID: 3300008219
• Scaffold ID: Ga0114905_1102198
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 993
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 40.24
  • Long. (^o): 2.3
  • Depth (m): 1876

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009538	Metagenome	316	Y
F042380	Metagenome	158	Y
F072435	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114905_11021981	F009538	N/A	IQLPEFAAVIYDNVIQLNLKAERKDRATNQKPGFSDNQDDWQLVRNGLNFFRQHFAKEYMVLLD*
Ga0114905_11021983	F072435	N/A	MKQFTIEVSHASGAQLQTIAAELKIMSHGWQKFGPRIRINGDKLQALELRVPSHKRPQASSRKRHNMAMFR*
Ga0114905_11021984	F042380	N/A	MNMKEIKTITLDQPFFGEKKFTLEEYQKRWRGHPQEIWTFLVDFGTVEEMKFGEKIVELFPKVVEKAFNKIYEEQNAKKRSN*