Scaffold Ga0114905_1058711

Overview

Basic Information

• Taxon OID: 3300008219
• Scaffold ID: Ga0114905_1058711
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1399
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 40.24
  • Long. (^o): 2.3
  • Depth (m): 1876

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002430	Metagenome / Metatranscriptome	560	Y
F011124	Metagenome / Metatranscriptome	295	Y
F048647	Metagenome	148	Y
F061818	Metagenome / Metatranscriptome	131	N
F074150	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114905_10587112	F048647	AGGA	MQKKLYNVKIDLCVWYDRNFEIEATCEDEARNVAHDIAREQTMHMIGVGIDVENDGDWTYGDQDFSTAYGELDE*
Ga0114905_10587114	F061818	AGGAG	MMTKSQEFWAWIDQCPDGVYVNHDFTDDEDDQKIYVFGFAVPKEIDDA*
Ga0114905_10587115	F074150	AGGAG	MPKYEITRSYTVACVATVEAESVDQAERMAFEYDLIWKEYDGDYHSQVEVEEIDNDDA*
Ga0114905_10587116	F002430	AGGAG	MMTLDLPKKEVNAILVALDGEIESQLGGRPVDWESFPEVAALLMAYYNTRCKFEEIDDV*
Ga0114905_10587117	F011124	AGGAG	MFDPDKTYGAVVWDMSIAVVDTEADDYVRNEDDTVKLFNMPNYDYSYICDDIDVN