Scaffold Ga0114158_1000070

Overview

Basic Information

• Taxon OID: 3300008160
• Scaffold ID: Ga0114158_1000070
• Source Dataset Name: Human subgingival plaque microbial communities from NIH, USA - visit 2, subject 763496533 reassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42937
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (2.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040685	Metagenome	161	N
F051212	Metagenome	144	N
F081454	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114158_100007019	F081454	N/A	MKAFKFILLLFITSASLVFGQEKRYFFKHEFQPNSKYLIKYKTDMDGGYKFVGSKEVIDKIGMDGVKMTINSDIESAISTQKKQGNNVPFILEYTKYFYKAEINGETVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDENTKKILIESIKQFSAIDTDFPKEGLKIGDSFDVVVPYKQSTQMGDIEMKMNIKYTLLKVEKEEAYFDMLVDFVMEDKNVKNMDLSASGDGKGFLLFDMKNNYFTNQNIDMTINLKLKTELLTLENTSKAKSVITQQKIK*
Ga0114158_10000702	F040685	N/A	MKKLLFKLFFALTLTSISLHGQEKIQQVEVHIFGGMALYSSHYTINFLYKEFEAKQVMGEPAELPKKILQLNPPDKWRVFTKKINLDKFKKLRDGPSEQTVDGQDEVIIIKTDKKTYRKMNASGNDRDREVWYDLLQIIAKEFGKKGVYE*
Ga0114158_10000703	F051212	N/A	MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKGVYLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTNKKEYSKTNIQNNKTWDYITKQVIDIKYSQLNNHLNLEK*