3300008160: Human subgingival plaque microbial communities from NIH, USA - visit 2, subject 763496533 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008160
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053089 | Ga0114158
• Sample Name: Human subgingival plaque microbial communities from NIH, USA - visit 2, subject 763496533 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 135082819
• Sequencing Scaffolds: 8
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040685	Metagenome	161	N
F051212	Metagenome	144	N
F051213	Metagenome	144	N
F054111	Metagenome	140	N
F061925	Metagenome	131	N
F061927	Metagenome	131	N
F063778	Metagenome	129	Y
F064818	Metagenome	128	N
F070224	Metagenome	123	N
F081454	Metagenome	114	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114158_1000069	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	43055
Ga0114158_1000070	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	42937
Ga0114158_1000085	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	40357
Ga0114158_1001100	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	9983
Ga0114158_1006289	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	2829
Ga0114158_1031303	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	907
Ga0114158_1047319	Not Available	659
Ga0114158_1065534	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114158_1000069	Ga0114158_10000695	F064818	MDKDEFLKELIAFIADNSSELHPKVFKNKIQFGINKSSYTEMRFDYSQNYKGFYLQLASYKKEVGDFFEQEMGNAFLKMLEDESKEFRNLFFAQNSFQLSHYYYGFPIMTNDNTGHLYPEIGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKKFPSCFFNTALVALLIIEKNLLSLNDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK*
Ga0114158_1000070	Ga0114158_100007019	F081454	MKAFKFILLLFITSASLVFGQEKRYFFKHEFQPNSKYLIKYKTDMDGGYKFVGSKEVIDKIGMDGVKMTINSDIESAISTQKKQGNNVPFILEYTKYFYKAEINGETVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDENTKKILIESIKQFSAIDTDFPKEGLKIGDSFDVVVPYKQSTQMGDIEMKMNIKYTLLKVEKEEAYFDMLVDFVMEDKNVKNMDLSASGDGKGFLLFDMKNNYFTNQNIDMTINLKLKTELLTLENTSKAKSVITQQKIK*
Ga0114158_1000070	Ga0114158_10000702	F040685	MKKLLFKLFFALTLTSISLHGQEKIQQVEVHIFGGMALYSSHYTINFLYKEFEAKQVMGEPAELPKKILQLNPPDKWRVFTKKINLDKFKKLRDGPSEQTVDGQDEVIIIKTDKKTYRKMNASGNDRDREVWYDLLQIIAKEFGKKGVYE*
Ga0114158_1000070	Ga0114158_10000703	F051212	MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKGVYLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTNKKEYSKTNIQNNKTWDYITKQVIDIKYSQLNNHLNLEK*
Ga0114158_1000085	Ga0114158_10000859	F061925	LKICELFCSSTTDYIDWKNPKSIDSIPYDARFYTDNKKTIYIAINSFSKNIFSALNLILAKHDYHLTDCDTDEEVTLEHIFRSVI*
Ga0114158_1001100	Ga0114158_10011004	F054111	MNKSLESITHEEFLKLMERLKNLQEFTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLFLEIESLSTADRDLFLNILDKEILFLI*
Ga0114158_1006289	Ga0114158_10062892	F063778	MPETISEGAQQKLLQQLQDALGLVADADTSAHDVAAITQSAADGHQLTEVMLQQMTAVEAYLKNCQVSINDAIGNIGAIPLDPPPDD*
Ga0114158_1031303	Ga0114158_10313031	F051213	MNLYKILGALILALSFVFTSCDWVGNEPTIEGDRYKTFDSSAQRKSFRVVNASGKRYNHKVDWDIVGIKQLWVKTYLTKKVDTLSNGDLKISYDWVSFTVKENKSVIEVEVQKNETGQDRSVFFVTSNNRTQSHRPNIVVTQKAK*
Ga0114158_1047319	Ga0114158_10473191	F070224	SPLKSGHTPGSKIRTRDWVKVDFSDQNNLHIMGFGDSLILENRFVYKADRYPNAKEYELYHKGTGEEITKEVFDSIKFSRMPTALREIKKYKLPRTRRFSGEVDRWQHPHLFVVEHDKKAGRYYKYRIALVIYIDYHHPEAYTVH*
Ga0114158_1065534	Ga0114158_10655341	F061927	KTLIISINFFSLNLFLNYIIMKNSIFILSAMFILGACSSDSAQKATEKIKNAYSDGLRKTFIKEGIKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNSPKDLDDRIEKAISSCIGE*