Scaffold Ga0100219_101641

Overview

Basic Information

• Taxon OID: 3300008157
• Scaffold ID: Ga0100219_101641
• Source Dataset Name: Minidiscus trioculatus alone and Minidiscus trioculatus with Planctomycetes bacterium Co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10312
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location

• Location Name: USA: Monterey Bay
• Coordinates
  • Lat. (^o): 36.746
  • Long. (^o): -122.026
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F094948	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0100219_1016418	F094948	AGGTGG	MTAVWVLDCHYNFAHVLSSPQTTTTGVGAAKHWADLEILAQSEARCRPTHGCKSAASTSTKVLQVFINLLGTQAMPIHQYICQPTSLGGC*
Ga0100219_1016419	F094948	AGGTGG	MTAAWVLDCHYNIAHVLSSPQTTTTGVGAAKRWADLEILAQSEARCRPTHGCKSAASTSTKVL*