3300008157: Minidiscus trioculatus alone and Minidiscus trioculatus with Planctomycetes bacterium Co-assembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008157
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111469 | Gp0116132 | Ga0100219
• Sample Name: Minidiscus trioculatus alone and Minidiscus trioculatus with Planctomycetes bacterium Co-assembly
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 72822224
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	2
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: USA: Monterey Bay
• Coordinates
  • Lat. (^o): 36.746
  • Long. (^o): -122.026
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057890	Metagenome / Metatranscriptome	135	N
F094948	Metagenome / Metatranscriptome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0100219_101641	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	10312
Ga0100219_102567	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	7918
Ga0100219_103013	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	7152
Ga0100219_106318	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	3972

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0100219_101641	Ga0100219_1016418	F094948	MTAVWVLDCHYNFAHVLSSPQTTTTGVGAAKHWADLEILAQSEARCRPTHGCKSAASTSTKVLQVFINLLGTQAMPIHQYICQPTSLGGC*
Ga0100219_101641	Ga0100219_1016419	F094948	MTAAWVLDCHYNIAHVLSSPQTTTTGVGAAKRWADLEILAQSEARCRPTHGCKSAASTSTKVL*
Ga0100219_102567	Ga0100219_1025672	F057890	MVLSSEGLHLLSNVAIWRHDFETINDKNVTMWHHYYIDVINYYIMKENDCQRIISNNNKKEYSTSDGWDVFRFQVSEEHRMNRTFNTLNDFLEYWFHEYHNRQESSRLEPVYMKKQTKEQSGECPTGVQQEASERYQKLSYTDKAIYRAIGKEYFRKKK*
Ga0100219_103013	Ga0100219_10301310	F094948	AWVLDCHYNIVHCLSSPQTITTGVGVAKYWADLDFLAQSEARLRPTHGCKSTAGTSTKVLQVFMNLLDT*
Ga0100219_106318	Ga0100219_1063182	F057890	MVLSSEGLHLLSNVAVWRHDFETINDKNVAMWHRYYTDVINFYIMKETHREWIENKNKEKMMKKEYSTSDGWEVFRFQVSEEHRINRTFDNLNDFLDYWFHEYHNRQESRNRIEPCYMKNHTKEQPGQGPTGVQQEALERYQNLSYTDKAIYRAIGKEYFRKKVDYSHMSNVNN*