Scaffold Ga0100218_10053

Overview

Basic Information

• Taxon OID: 3300008156
• Scaffold ID: Ga0100218_10053
• Source Dataset Name: Minidiscus trioculatus Co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37592
• Total Scaffold Genes: 79
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (8.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location

• Location Name: USA: Monterey Bay
• Coordinates
  • Lat. (^o): 36.746
  • Long. (^o): -122.026
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019658	Metagenome / Metatranscriptome	228	Y
F064770	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0100218_1005338	F064770	N/A	MDFNLKTYKRSRIKHYFKRINFFFFFHGTSLNNES*IKTEQVFVNYGLKYFRVLNKLMINTLKNSIFKNLVVLIHGPIILLSNPNTKLTFKESKSLNPLISLLSFRLNNKIYSKKQIKNLNRMSYLENISIFHNSMKTCIKLPYYKFKNKRTPVVSK*
Ga0100218_1005357	F019658	N/A	MKINRIKSQNYKLFKYNLLKLQIYSNESIFDLSNFSNSTLEQIEAYLKQVLKIIFEYHV*QFKILFIGFPVVCKMKQMKLINFTNHNFISEKS*VSGVFRNRFSILTYLKLIQLQSFSKSLKLLLTIKTKPHLVVVFNQKVELNTINEFYKSGIPILSFN*NSFDTLKVAYHTLGNFNFIEKNIKLTFFFLLYSLLKKTPLKKRRNQNF*