NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114367_107288

Scaffold Ga0114367_107288


Overview

Basic Information
Taxon OID3300008147 Open in IMG/M
Scaffold IDGa0114367_107288 Open in IMG/M
Source Dataset NameHuman tongue dorsum microbial communities from NIH, USA - visit 2, subject 763961826 replicate 1 reassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3119
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033081Metagenome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0114367_1072882F033081GAGGMHTDMHTDITVVYRPKKGVIAWLFRRAMPQDTRPTFVWSRLVTEIENAGYFSRRKFCVVAVGLIIMTIATIKMLLFVPGLNQSVVSLLTRGLETFLPTGWATVTAWTVGMAGGVFLMGDFTNYTPSQKFLHKIKATRCEVYNTILFLALLEEQAFRSGSERWNWRERVRASVCFGLLHITNIWYSFAAGIALSATGFGFLLVYLWYYRKYRNQIIATAAAATVHALYNAIALSLITVVVAVYLAIDIAKLL*

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