Scaffold Ga0114354_1005600

Overview

Basic Information

• Taxon OID: 3300008119
• Scaffold ID: Ga0114354_1005600
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0110-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7675
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (90.48%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 7.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011292	Metagenome / Metatranscriptome	292	Y
F019438	Metagenome	229	Y
F096622	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114354_100560011	F011292	AGGAGG	MTPRSFDIDTCKEVVGDARMRTIEAKARQDADNGVMDAPAIVKGTYWDGVYSVMEAVVYITAHDKRLARIQRMKERA*
Ga0114354_100560016	F096622	GGAG	MSKWDSHRGKGNTAFNMLAQAGDVAKMTREHNTWMHERGQLCWVCQKESRPQQGCVLNLKPGFKKYVCKPCVDARSAKENA*
Ga0114354_10056009	F019438	GAG	MMETIVVTILLGGIGFIVCGFVLIGLMHLWFWMDENERGDR*