Basic Information | |
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Taxon OID | 3300008119 Open in IMG/M |
Scaffold ID | Ga0114354_1005600 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0110-C-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7675 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (90.48%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.8271 | Long. (o) | -83.1945 | Alt. (m) | Depth (m) | 7.9 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F011292 | Metagenome / Metatranscriptome | 292 | Y |
F019438 | Metagenome | 229 | Y |
F096622 | Metagenome | 104 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114354_100560011 | F011292 | AGGAGG | MTPRSFDIDTCKEVVGDARMRTIEAKARQDADNGVMDAPAIVKGTYWDGVYSVMEAVVYITAHDKRLARIQRMKERA* |
Ga0114354_100560016 | F096622 | GGAG | MSKWDSHRGKGNTAFNMLAQAGDVAKMTREHNTWMHERGQLCWVCQKESRPQQGCVLNLKPGFKKYVCKPCVDARSAKENA* |
Ga0114354_10056009 | F019438 | GAG | MMETIVVTILLGGIGFIVCGFVLIGLMHLWFWMDENERGDR* |
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