Scaffold Ga0114354_1001907

Overview

Basic Information

• Taxon OID: 3300008119
• Scaffold ID: Ga0114354_1001907
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0110-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19472
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (86.49%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 7.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007519	Metagenome / Metatranscriptome	349	Y
F010754	Metagenome	299	Y
F011292	Metagenome / Metatranscriptome	292	Y
F019438	Metagenome	229	Y
F021243	Metagenome	219	Y
F093280	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114354_100190711	F021243	GAG	LKQGQWEHTSGWRKRQIERDFAAIDDANNIRKKQIAHMDMHSHPAEFVHLHRNDTIEEVAQHLETKFTGPFGRDTVQSFATFVRSMKK*
Ga0114354_100190712	F093280	AGGAG	MSPKIEALIKATGCADVGELFDRSIRLGQVLHQFKQEHGRIMDATELRYLSSWP*
Ga0114354_100190713	F011292	N/A	LAEGEDMTPKSFDIDTCKEVVGDARMRVIEAKARQDADNGVMDAPAMAKGTYWDGVYSIMETTVYITAHEKRLARMQRMKERA*
Ga0114354_100190714	F019438	GAG	MMETIATTIILGFIGVVVAGLVLVGLMHLWFWMDENERGDR*
Ga0114354_100190731	F010754	AGG	MMMDLDWKECVYCGDDVHIERWALGYRWCKFCGEDIARTERTSWCIVQEYGKGNYQFVTATSAPATLKNTNQKHTRGDAL*
Ga0114354_10019076	F007519	AGGAGG	MTTGIEELKLIKPKKGRGLGKKPPLFCTSLRLPKEVMDYFNTHHPYTKQAKMREILTEYINSQMQGANNGNN*