Scaffold Ga0114351_1005391

Overview

Basic Information

• Taxon OID: 3300008117
• Scaffold ID: Ga0114351_1005391
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17075
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (21.62%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001640	Metagenome / Metatranscriptome	659	Y
F002778	Metagenome / Metatranscriptome	530	N
F009808	Metagenome	312	N
F019647	Metagenome / Metatranscriptome	228	N
F038230	Metagenome	166	N
F041020	Metagenome / Metatranscriptome	160	Y
F045094	Metagenome / Metatranscriptome	153	N
F052594	Metagenome / Metatranscriptome	142	N
F054865	Metagenome / Metatranscriptome	139	N
F099306	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114351_100539112	F041020	N/A	MKQTPKEKAKELFDHYHILITGIGGELGNEILVTILAEQCALFFAMQMQQEKWDEKKYKAHSYWEEVEVEIVNIGMYAM*
Ga0114351_100539113	F038230	GGA	MQCKKDRNAYMREYMKRYRASMNEYTYKKIRERENHRLRAKYHAMTDEERQRYIEYQRTYHKLKQFTNE*
Ga0114351_100539116	F045094	N/A	MNDISKRFASYLMDDYHIKGTTEEDVDKAINKIFRYELLDDAQQVLFNEIMTEALDVPWIAEQITDVWDRYEQEILDCKKEDYENR*
Ga0114351_100539117	F019647	AGAAG	MKIVKGIVKYGAGAPREGQYGPSINILVTLEDQSQVRVYGKPGDVIERYKSGQNIQLIDDKGKYKVVEDEAQTPAAQAEQSEKPDLAALVFELSAIYSQAYIDIYNKISEAGIPHENATAATSTIFIQVFQKLR*
Ga0114351_100539120	F002778	N/A	VKEYNAQMMEIKAFCDEVNAWISTAPSAEMLDECDEYLRQLSAYYSRYTVISGMNESIYSQLLMMCIRDMAEDEYKRIKHSSTLTDYYVKGKYPKATAIFEQCRAVKQLLIITSDNYRTLLSSFRQERILIGHMTT*
Ga0114351_100539127	F054865	N/A	MEVKTKRFIIKYREGIVSVAANDVAEAIERFKELRIETCAKELTIVPEDEMYKRREELFRKE*
Ga0114351_100539129	F009808	N/A	MLQFGRFAVVFIDFLNPSDKRSKYPPRVAAAATVIALLELWFSIQGQSTGAEFWAMFFFIGAIICFGYVLEIQFIEKGIEAYGIGVKEPKTRRRRLVKETTTTNITSTQPIKFTMAVCFMLTVAYLPAQNNHFFAYNTMSLEKIDKGLLERRYYSEADESYTVDTITYDMLSGINLWDGYSRTTYDNTMFMTYGTQNFEYYPVAGLWKYKNKYYDYIGLLKFVSKYFKRNFLNKKITYGKIRRH*
Ga0114351_100539131	F099306	N/A	MIQEKVIRKRLNNLEQIYIAESMKDRRKQDKWFMGIIEQRMKQEKTKLTLLKIGTHGC*
Ga0114351_100539132	F052594	GGA	MAAKNYGLDKKQIALCDAMIAKYPKGIKTNNVVSSASTLISFYNSKDERNKQFYQYMNPERMVSLLWQVVKINNEKEDVKESAVRLLNKLLQDIVVN*
Ga0114351_100539136	F001640	N/A	LNKELLTSKINKMRYLLLFLPLFSFAQDVVKDTVYIQKQGNIYYIIQQTTLSDSTVTGSKQILGDSATAIQSLVTDAERQSNTLAIHAKPIITKGKTVQRINYYNDLHVQISGKPVYFTTAQRDTAKFIGDWRLNFNGEIIDGVIQLNSNKRLIFNPDNGKVYSISTNLLLSTFTNQVSFAFNGIKYDLYKYADGKFATVDGDVRLIKLE*