Scaffold Ga0114351_1000179

Overview

Basic Information

• Taxon OID: 3300008117
• Scaffold ID: Ga0114351_1000179
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56130
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000952	Metagenome / Metatranscriptome	822	Y
F026015	Metagenome / Metatranscriptome	199	Y
F096915	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114351_100017919	F096915	GAGG	MISSNIYKYKPQDFARCESNPLLDQCKRCGRNVHINPAHPGWQTWIGPWTGHGPCPNGDFMEIKNADS*
Ga0114351_100017948	F026015	N/A	MAYVGYTDVANQANTSDGFAANVNAVNVVGGGVGAEVGDTGVVDLYGTTPVETFYIADETSPGYVLQEDDSKIIREAS*
Ga0114351_100017958	F000952	AGGA	MATSDQEQKSVLVTQHKRMAMGAPINGQSMQGGNDKPKQGALTQAAKKK*