Scaffold Ga0114350_1022410

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114350_1022410

Scaffold Ga0114350_1022410

Overview

Basic Information
Taxon OID	3300008116 Open in IMG/M
Scaffold ID	Ga0114350_1022410 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2605
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)		Depth (m)	4
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029721	Metagenome / Metatranscriptome	187	Y
F091432	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_102241010	F029721	AGGA	MKTYSIEDLLVGQTYFPRSLARRFMGGEITFAEKREDIWLDGYEAYAIRYRVGQSIKQNWATVAVKVAD*
Ga0114350_10224109	F091432	AGGA	MDLKEFRDFITAQRLAEIKEKRNSNLTAILSVANATITETTRKEN*

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