Scaffold Ga0114350_1007630

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1007630
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8237
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (90.48%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F001043	Metagenome / Metatranscriptome	794	Y
F006984	Metagenome / Metatranscriptome	360	Y
F017134	Metagenome / Metatranscriptome	242	Y
F036238	Metagenome	170	Y
F048982	Metagenome / Metatranscriptome	147	Y
F074872	Metagenome / Metatranscriptome	119	Y
F076101	Metagenome / Metatranscriptome	118	Y
F085262	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_10076301	F048982	GGAG	MISIELQDVLKSCRQIRGNDYNSGTHYLLGYLWANTSNKEKMRIAKLFAKDLEEIQKE*
Ga0114350_100763011	F074872	AGGGGG	MSVPPDTISTYKKGSKMTVDNKTYKVGDLFTTLKSHKTGVIKEIIPNASGSVRVLLEMPNKETRWTTVVVGA*
Ga0114350_100763017	F000311	GAGG	MYFELTAPDRLSMEMAYWEAQVMGLDPEAMSPLTFNIGTGSIEKVSNLRDKFNLKETYTSEYEPTGY*
Ga0114350_100763018	F001043	AGGAG	MSDYRDGFDDGYKFAREEIIEKLQEIDLADIDSWLLSKLADMIEGGDL*
Ga0114350_100763020	F036238	GGCGG	MGDRANFGFKQSNGETIVLYGHWAGHDMLSNLASAVEAARPRWNDESYATRICVSQLIGNQWSDETGWGLSVNRILDNEHKIAIIDWSAGTFSLHEEAPWSESDLNKVRGMQDEPIFTLPLDAFVNKYSRSLV*
Ga0114350_100763021	F006984	AGGA	MPNWVYNTLTIQGPKSEVDMIKDRLNKPFTLAQETFGMGDISSMGFPTKIKEVTYSNPVFAFFNIHSYKDEGITDE
Ga0114350_10076303	F076101	AGG	MYKITLSYDNNAPHWQGDYYDEMKAWEAFFQFIDWGFADEFATVNIYTPELKCYTKVFYREGRKVVTK*
Ga0114350_10076306	F085262	AGGAGG	MDNLYSILSEWYPEGEFSESELWDAIAESEGVEVSEIMDGDLIEYL*
Ga0114350_10076309	F017134	AGG	MSLFTVACLNYEICGDESTFDSVEQYEIYGDDYICAECYADEEMTFFEIAGWADSDALASAGHGSDEDY*