Scaffold Ga0114350_1006526

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1006526
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5613
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (89.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011386	Metagenome / Metatranscriptome	291	Y
F017484	Metagenome / Metatranscriptome	240	Y
F029434	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_10065263	F011386	AGGA	MKVTLTTMSGNTRNINLMTKQEVYEFIEVFKSTLLPNQRVKVTCDLLSIDGYLQGSTQQG
Ga0114350_10065268	F017484	GAGG	MSNLEIFRLDEQGSGWVSLEDATTSELIDLEWAIANKAKSTMLCFVCHVEIPRGNVCVNHKSVRGGIYFE*
Ga0114350_10065269	F029434	AGGAGG	LNKTYRFGVWLDIDAEDDDMALSLFDSIVKNTFVKDSYCFNWEEVE*