Scaffold Ga0114350_1001270

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1001270
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20104
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (59.52%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F008814	Metagenome / Metatranscriptome	327	Y
F014140	Metagenome / Metatranscriptome	265	Y
F028150	Metagenome / Metatranscriptome	192	Y
F074876	Metagenome / Metatranscriptome	119	Y
F078716	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_100127023	F008814	GGA	LSKLTVLEEIIKSIGEELYQKWYNGLAIEDRTEEASQAMAKNAGETAVWVIQNFMQKFNDAADELKD*
Ga0114350_100127030	F074876	AGG	VKEYYEVVNIVYLHDLKLYGSIEKLGAYASVVKYSIDNVDYEELVENDDFAIIDEIVFHHVEEQE*
Ga0114350_100127031	F000473	N/A	MEFINKDKNHFKYGINQWTGEPNKPVFYTKEMAQKIRELQKPSLLLMDIAKYPEFLAVRLYEDNFLQFDGIKKEQVIDYVSKVKRLIESYGVRCELEGVPSERIL*
Ga0114350_100127037	F014140	N/A	MNKYIVQLSVEIEVEAFNSDDALEYIQDIFSVDDEIKKVSINKISPK*
Ga0114350_100127041	F028150	AGGGGG	MNWLKKRIIAILSENFTFLGFFVAWVVLEGSAKTVVGYVTVASVAIWFLTIGIRERAEKEE*
Ga0114350_10012709	F078716	N/A	MSDNGTGMDTPPAAGSPSGAVTSREATRKNPNQKYNQGIKIDQNKHGIRREISLNPKPAKRTGRKKV*