Scaffold Ga0114350_1000066

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1000066
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 58460
• Total Scaffold Genes: 97
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (38.14%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Associated Families: 12

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009329	Metagenome / Metatranscriptome	319	Y
F013631	Metagenome / Metatranscriptome	269	Y
F015080	Metagenome / Metatranscriptome	257	Y
F022640	Metagenome / Metatranscriptome	213	Y
F027828	Metagenome / Metatranscriptome	193	Y
F031454	Metagenome / Metatranscriptome	182	Y
F034907	Metagenome / Metatranscriptome	173	Y
F037191	Metagenome / Metatranscriptome	168	Y
F048940	Metagenome / Metatranscriptome	147	Y
F082582	Metagenome / Metatranscriptome	113	Y
F091925	Metagenome / Metatranscriptome	107	Y
F101038	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_100006617	F009329	AGGAG	MTPYELRFEVFKQAYAMMNDQFSIEYDTARVWNDNSENTVKIDYPEFPTLDKVLEQAQIINDFVSSK*
Ga0114350_100006635	F013631	AGGAG	MIVSEVFHYTTSRWDWHDCNVNQMWIEEIEESPDCYRYIAVAYNPRKDASMVMSEPRCYADTLNWVRIWCNSFCILPEFSVAV*
Ga0114350_100006641	F027828	N/A	MLDKVLMVEELLNEKQLNALRDILYFYKEFENELYNYPPEDTLFTKTQFEIFDIFDIK*
Ga0114350_100006643	F091925	N/A	MTSISFTSGELLDIISALEEKENLAYLVDYDPGLAAYYMNLGNQFQRIYDKLQDFVPENRVANLVLAVN*
Ga0114350_100006648	F101038	N/A	MELTNSFPPADAMVKKIQEFNYVKFGDNVVKYSITACAIVVAVSSYLWTAFQLWWDDNGEATQVNLIRFVVNVIDFIAAIVIATPKVYRWVKLNSNRLVDSLFFQYTFA*
Ga0114350_100006652	F034907	GAG	MITLVIGGVIVSAFLILFYLEDKDGGGLYDPDPSASYRHKKSNK*
Ga0114350_100006653	F022640	N/A	MRIAFLIATLALGLRFGLVAHATTNEYQEQQAEMFCQANSNYCK*
Ga0114350_100006657	F082582	AGG	VEGVRPTYKRPTNLITMTVDFSKDVMLGMLRKGATGTQLLDILNTLVPDQTELTREYVCDQLGIADCPENDDEIAAYMAAV*
Ga0114350_100006660	F037191	N/A	MTVAEFIEKLKEFPLDQEVRITDEYRYNFYQGDFEFQLFEEVNGSTFVDIGVGGFDEFDDD*
Ga0114350_100006665	F015080	N/A	MFDQLIFEAHPIPGAIQARYKFSNDWSISVVSGLPGSGLYGNVTDNTYEVAIFRPNGNMTEDVIGWNTKAEVSAMMRVLVQL*
Ga0114350_100006668	F048940	N/A	MEKKFFINFIQLVNEVQSAKTQLPSQAKSYKKSAWVKQISNPKQKADALSRV*
Ga0114350_100006675	F031454	N/A	MNDSTLDLFCQHEDENYADEYAMEIERKCAELEITVDYYLMEFI*