Scaffold Ga0114347_1040218

Overview

Basic Information

• Taxon OID: 3300008114
• Scaffold ID: Ga0114347_1040218
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2051
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001019	Metagenome / Metatranscriptome	804	Y
F004666	Metagenome / Metatranscriptome	428	Y
F050154	Metagenome / Metatranscriptome	145	Y
F095357	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114347_10402181	F095357	AGGCGG	MATSKEIKVGELLANSVEDHWFNPATLGHYLSQQPHWTIDRVMEVVCWIIEKNAGVYKDKAGKQDVSEGLVLAYKLDQLVD
Ga0114347_10402182	F004666	N/A	MITKGSITMATKREYLASKGISVGRRGRFSSAATKALQDAENQGLKFEAEVKAKKA*
Ga0114347_10402184	F001019	GGAGG	MNYGPTLEILEVEYSCSPGGVDTFEVYEIDHLTMDMPIYETESLTDAVQFCYNLGQDFTVRTVAAWHRNEELNYAV*
Ga0114347_10402188	F050154	GAGG	MLSQLIEYMNIHLISLNQDLEGDYNVESKINIQGQIMATEHLMSVAQDIMGS*