Scaffold Ga0114347_1008714

Overview

Basic Information

• Taxon OID: 3300008114
• Scaffold ID: Ga0114347_1008714
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23451
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (22.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008423	Metagenome	333	Y
F024312	Metagenome	206	N
F035308	Metagenome	172	Y
F038998	Metagenome	164	N
F059001	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114347_100871411	F038998	N/A	MIVLNICKQEINWKEAKNGKHYANVATDFLKEPDEKGNTHTVWNNQSQEERAEKAKKNYCGRGKQVSYNAPTAKKEFAVNQQESEDDLPF*
Ga0114347_100871413	F024312	N/A	MTPINKLWDLRENVKFWNYKVDTSYPQNAKEMMDRLNAAKDELKKHKLRYFPELLDQPKRNYIPYKMLADKFEVFENYLND*
Ga0114347_100871416	F008423	N/A	MSKLIYQAKQLKLHQRATILLQLLKEAQGRQNLFEADLSEWRRGLDTTRTMISEEDLLIKIARMNDIQRRILKSYHFLILDLYTLTEEFMLPINLLHF*
Ga0114347_100871418	F059001	N/A	MNKLKTPQEKANERYQAESIKPMYAFIIVCIAFLITAILQNI*
Ga0114347_10087145	F035308	N/A	LIDTSNIFETCKEEVIAGYSCYSFVIDGCTHYVFGETQEQAFDYLADLINNYGESKQ*