Scaffold Ga0114347_1007139

Overview

Basic Information

• Taxon OID: 3300008114
• Scaffold ID: Ga0114347_1007139
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5940
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (69.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F000808	Metagenome / Metatranscriptome	882	Y
F003965	Metagenome / Metatranscriptome	459	Y
F081245	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114347_100713911	F000447	GAG	MGYIEIFRMNNEGAGWVDLSEATPDELFNLELGLLNENALFNTPEAD*
Ga0114347_100713917	F000808	AGGAG	MLDREYNYSLTTSYDGELVHTLRVSDMLEAVDAWNKCVDFGDAKEYATYNLSDPTGKMYTKNFYRNGVVNGK*
Ga0114347_10071392	F003965	AGGA	MNSTIIEVCKTHVPNKSAISEVGDDQFTFCEVCEQNIERWYNDTDPERLPMWTNWKVGK*
Ga0114347_10071396	F003965	AGGA	MNSTIIQVCKSHVPNKSAISDVNDEQFTFCEICENNIERWYNDTDPERLPMWSNWTVSK*
Ga0114347_10071397	F081245	GGA	MIDYVKQLELKNYLSDEEIDPLAKRLDELISKGEYK*