Scaffold Ga0114347_1005781

Overview

Basic Information

• Taxon OID: 3300008114
• Scaffold ID: Ga0114347_1005781
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6769
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (64.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F012975	Metagenome / Metatranscriptome	275	Y
F037227	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114347_100578111	F000671	GAGG	MEKILCYSCNKTKNQLHVRRSSLLPINLLMCETCISSKFEPRWVVILAGRQSGSEFVRDFVLKKRYIGNDISASEILV*
Ga0114347_100578115	F037227	N/A	MVRQKGKVSMANMTVLEGIIEDVSTELYQKLWNAIPVEEQTEDSSRAIGLNSRETTIFVIQSFMNKFNAAAEELKDK*
Ga0114347_10057817	F012975	AGG	MLNLTLKGVEVFMNRSKTKSQESFWDNYDLIIWKKDSGGYTNIKGMFRKDSWGTAETISVDDHGIWKLPLKYVKHFK*
Ga0114347_10057819	F000473	AGG	MTFIDRSKNHFKFGVNEWTGDPNKPVFYTDEMRKKVREIPKPTYDLLMDIVMYPEFLAIRLYEDNFLQFSGNKKEMVIDYVSKVKKLIESYGVRCELEGAPSDRVL*