NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114347_1004592

Scaffold Ga0114347_1004592


Overview

Basic Information
Taxon OID3300008114 Open in IMG/M
Scaffold IDGa0114347_1004592 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13867
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (60.53%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023329Metagenome / Metatranscriptome210N
F024101Metagenome207Y
F031460Metagenome / Metatranscriptome182Y
F033009Metagenome / Metatranscriptome178Y
F053253Metagenome141Y
F072279Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0114347_100459215F031460AGGAVAKVIDSVELNLQMWSTVTLSADEIQDIYPEFEDMVDFEDTDELEQALQEYMDMNYIDHIQYADGALDDCTVHFLYEDDGSE*
Ga0114347_100459216F023329AGGAMVEEEQDKEIKQLEAFFKYNIPNDEILSGRLKIMLADLSWQMDLPTWTKEELDVMCARMDALVEVSNLLYDIQWHKQNWERKTSGKSN*
Ga0114347_100459218F053253N/AMLEKVTMLDFDLEMPLEKILTQMLDNVEGHIVNCNCKHCMSLEVLAYMIMEKE*
Ga0114347_100459228F024101AGGMSRPKAIHTMVNEVFSKELDNDLIDEIVEERNFIVNTLKTWINTDEMWQELVDNKEARKLFINNIQLLFMQETENSVLIELATINQGVDK*
Ga0114347_100459232F033009AGGAVSNSTQLWWAGTITQFGDMQKFYDVNLWTMERKDGSWASVILDGVDIATFRGDGAWNEARKVAESHIRKREQLEQEGWVIA*
Ga0114347_100459238F072279AGGAMMTRQHFEKVASLLKQFKDEIPQTTFEEIVMEFGDLFLAENERFNDAKFQEACGITWPTFVRL*
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