Scaffold Ga0114347_1003283

Overview

Basic Information

• Taxon OID: 3300008114
• Scaffold ID: Ga0114347_1003283
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9673
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (82.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000450	Metagenome / Metatranscriptome	1126	Y
F002935	Metagenome	519	Y
F063705	Metagenome / Metatranscriptome	129	Y
F085262	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114347_100328315	F002935	AGGA	MSERVKGYVGQIVDGKKLATIANDIYKAQYNDFSACTVDNLLFITLEETNAFGDHKYALVCSEGVGWEQDTFGCLEVPTNIGQMGLWNGRVFISVEKVKECLTDETEDISDYIRTFGYRLDSNCSLWQSKMSEVGSTILA*
Ga0114347_100328321	F085262	AGGAGG	MNNLYSILSERYPEGDFNEMDLWEAIADSEGLELYEIMDGDLTEYL*
Ga0114347_10032836	F063705	GGA	MTNQLIEYMKLHLISLRQDWDDAINNIELIDSEYHPSDDYFEGAIEATEHLLSVATDILSTNERNTNG*
Ga0114347_10032839	F000450	GGCGG	MGDRANFGFVQPNGNTIVLYGHWAGYNMLANLAEAVVKAQGRWSDPSYATRIAISHMIGEGWAMETGWGLHVNEIGDNEHKIAIVDFQQQTFSLHEEDSYHNESNKVRGMSNEAIFTQDLSAFCEKYSDSLIKV*