Scaffold Ga0114347_1000989

Overview

Basic Information

• Taxon OID: 3300008114
• Scaffold ID: Ga0114347_1000989
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23423
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014495	Metagenome / Metatranscriptome	262	Y
F015592	Metagenome / Metatranscriptome	253	Y
F042313	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114347_100098927	F015592	GAG	MKFLTSLLALIERLFAYLDKARWKQQGRQETIKEINDAINEQIALGEAAIIVPDPERTERLRNRFDRSRSDK*
Ga0114347_100098932	F014495	AGGA	MIKAQQAAPMGKPYRVSSDSAWPLRGLDGKTFAERRAEREKGQSK*
Ga0114347_10009896	F042313	AGAAGG	MTDFPTILYRTPGPFKKPRGGTYATRPAADKEAFDALIAKGWFASYEEAKDSKAAKKVAAPAEPVEDEIDEVSGPTREELEAKAKELNVSYDGRTSDKKLAERIAKALEE*