Scaffold Ga0114347

Basic Information
Taxon OID	3300008114 Open in IMG/M
Scaffold ID	Ga0114347_1000757 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	30603
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (62.26%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

30603

Total Scaffold Genes

53 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

33 (62.26%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7635

Long. (^o)

-83.3309

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004111	Metagenome / Metatranscriptome	452	Y
F005175	Metagenome / Metatranscriptome	409	Y
F006218	Metagenome / Metatranscriptome	378	Y
F008415	Metagenome / Metatranscriptome	333	N
F031850	Metagenome	181	N
F081080	Metagenome	114	N
F105047	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114347_100075717	F031850	AGTAG	MHQDDDDYYNANVKAIVFIERDNSITVKFTGFQDKEHSAIFSSWLMMLLNIENAIINDSQSKSIH*
Ga0114347_100075724	F008415	AGGAGG	MTSIQQLKEHIIRMNDEKLLNQFDLYNSFNLQDSKEVIYYKIIEYELHRRRLLEHKIMEDAYEGIY*
Ga0114347_100075731	F005175	GAG	MIDQELTVEIVCEMYEEKILVLKKEIDRLNEEVQALNLQLKKERENNEIKTS*
Ga0114347_100075732	F105047	GAGG	MKHINYDKVIVEWLDISSDGCDEAWNTEEQLKDLVPALCTTIGYLYEDNKDWIKTFATYSFNSDQTLDFGDCVCIPKGVVRSIRKLEN*
Ga0114347_100075738	F004111	AGG	MIDKIKQVNDLCAANGSYVNQHGKKTVSAWSKIKYFREVFGTEYGINCMMIEHTDRYVLMKCLIMGYDPERIISTGYSKQYRDKPGYIEIAETFAITRALSFMGLMLQDITSKEEYEELDIPVHPMDIKGTTSANSNRYDVEAVQKILKNINYAPHTAKLDFLWRANKDLLEQIKINDLNTYQSIVNKFDSKRDEITTQNEV*
Ga0114347_100075745	F006218	N/A	MSNEGGWVINAEKLNFCHSLEHSCYEIYFNNVRAKEKQALVNNNENDKRMNMYIEYLKKQKCKHKYATEEV*
Ga0114347_100075753	F081080	N/A	MVNGNCLEVMSTGKKFDTFRECTIAGYEFIAEQNKIFPIDQFEKTKPSFHFDCIETAEQST*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114347_1000757

Overview

Ecosystem & Geography

Associated Families

Sequences