Scaffold Ga0114347_1000563

Overview

Basic Information

• Taxon OID: 3300008114
• Scaffold ID: Ga0114347_1000563
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 62121
• Total Scaffold Genes: 87
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (20.69%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008081	Metagenome / Metatranscriptome	339	Y
F019126	Metagenome / Metatranscriptome	231	Y
F031852	Metagenome	181	Y
F075718	Metagenome	118	Y
F088308	Metagenome	109	N
F095001	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114347_100056330	F031852	N/A	MNIYLGDQAKRLYYGRDIPIDTIGVFQSHKGEWLYWYCSGWVYDTGFADSEAEALQTAKKNFRPYDRAADTE*
Ga0114347_100056349	F075718	N/A	MKAFEINTTAWEEENFVLFTDLTEGQIVDVITPIVMAERKFGEQYTNDDLIDALLDAYPSNRVYAYQNNNKLISI*
Ga0114347_100056351	F088308	GGA	MQMKALLIFLCLCGCNQKKVVIQNAGDVEGRKTYHVKVGNVTYEYMYAEEIANGLKTGDWLYNEDLK*
Ga0114347_100056358	F095001	N/A	MKAIIQMKGIYGTYFTQVKEFKNDQHLSNWLRFMDSNQNRVKVIGHKII*
Ga0114347_100056367	F008081	GAG	MTMEPVLNPFNYGEATKIIDENRKPSDWWQDYLALSEVFDENEFYILFSDGLLVKKGRSKMTSSNYIRGEKFKSFKQNYETT*
Ga0114347_100056381	F019126	N/A	MAQKVSKTNADLLDLVRNLNITTAEKGSKREAKLKKIAEKIKPLFDEYNEKREDIRLDHAYADQNGVLELNEKGEYKFTKEGIKGMAKGMKSLLDESFEFYQFTFSTEGIEDLKFLAGWVEGIEADKEQESDE*