Scaffold Ga0114346_1134385

Overview

Basic Information

• Taxon OID: 3300008113
• Scaffold ID: Ga0114346_1134385
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1080
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F001460	Metagenome / Metatranscriptome	690	Y
F001781	Metagenome / Metatranscriptome	635	Y
F050154	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_11343851	F001781	GGAG	MKPQDKDKLNECLKILDSTDLGLSLVWLWTWSTINNIFEDETYKQNCTIDEMWNHLCEAVEAGHGFSLEYGAEQHNDDVLEWMMNRDYIVDTMFEDDEEEEEDATD*
Ga0114346_11343852	F000263	AGG	MTISDDMFTDKESLELLPPHLQRMVDAGVTGLDIMHGELKNLMLIAEQELTDAIAREEETEEAMDSMDRTNAEGRLDTLVELYQLTYQLSFAIGARNEATR*
Ga0114346_11343853	F050154	AGG	MKIHLISLNQDIDKDLNVESKINIQGQIMATEHLLSVATDIMNNSNERYNNDNI*
Ga0114346_11343854	F001460	GGAG	MLGYTESDLNRMINAIHDSKLFYLRTPSDLMDKTELRADLEMAVSFLQGLWAEGYFD*