Scaffold Ga0114346_1041307

Overview

Basic Information

• Taxon OID: 3300008113
• Scaffold ID: Ga0114346_1041307
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2356
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007169	Metagenome / Metatranscriptome	356	N
F022862	Metagenome / Metatranscriptome	212	N
F102699	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_10413076	F102699	N/A	MNHQPNYYLTLNLPKGFSREDAEKIQKDLLDFLESKRHYGAKYDGKAGITVNVITVSTNHD*
Ga0114346_10413077	F022862	GGA	MDMKKFTPQQIDLLVKTRDEIRDLTNRQHKLYDNLVKELNVTIYAEDWLFDYIYNECGSIEDLENRM*
Ga0114346_10413078	F007169	N/A	MSYQTEFDFETPEQKEQRLKDWRDQEAELDKLFPEDDNYYRYNKYVDKIIDLLPYRLGWGFKHNWCELRWWVKCKYQKFRYGVSDDDVFSLETNIAKFIVPRLQYLKKVGKMGIPMKFLPSDYTSLSEEDQQKAEKIAEKEIDRILDEIIFAFDYIIDPDKYVPFPQLSTKWDLKDKNYFNREKTIEEKQAWDEYIKKCEQHNDRKKQGLLLFVEHMDILWI*