Scaffold Ga0114346_1027324

Overview

Basic Information

• Taxon OID: 3300008113
• Scaffold ID: Ga0114346_1027324
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11445
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002489	Metagenome / Metatranscriptome	554	Y
F006744	Metagenome / Metatranscriptome	365	Y
F017995	Metagenome / Metatranscriptome	237	Y
F024319	Metagenome / Metatranscriptome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_102732412	F024319	AGGAG	MTNRIWESRNDYLTNSDYVACSSGCGRVTAWTLCVMCGGDYATHALVNVR*
Ga0114346_102732419	F002489	GAG	MQEDPNKESSDLEDNLPLVTYIMLHRIYDLLTIISNKLVGSEDTAKMVEYHEKGYLLGPVPSFVPNNEEEIQ*
Ga0114346_10273245	F017995	GGA	MAKVKEYLEIISAECDECGGAGFLFWGNENNYDVEPCDCIAELNDELTIDWVNE*
Ga0114346_10273246	F006744	AGG	MNLEEFKKHVIAQREASKAQALSVLSATITETNERENLNG*