Scaffold Ga0114346_1004803

Overview

Basic Information

• Taxon OID: 3300008113
• Scaffold ID: Ga0114346_1004803
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8427
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (87.50%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F003212	Metagenome / Metatranscriptome	500	Y
F003456	Metagenome / Metatranscriptome	485	Y
F005558	Metagenome	396	Y
F013279	Metagenome / Metatranscriptome	272	Y
F018135	Metagenome	236	Y
F026830	Metagenome / Metatranscriptome	196	Y
F027417	Metagenome	194	Y
F033321	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_10048031	F003456	N/A	RKCGVIAERLTKAGAKDEGDIVTVIAGETYILELKNRATLSLPEFWREAQVEALNYAKARGLGEVPLSYVVVKRRNASIDQAWVIQDLTQWLKEKQ*
Ga0114346_100480312	F000821	AGGAG	MNKEYLQAKAELCLKQAEVDLEQEEIARAIKNIERANTALARIFNMEEDESE*
Ga0114346_100480313	F005558	GGAG	MNDAISWSELAELTHATQVERFNFCMCEDLEPHEYPYPDCVKELA*
Ga0114346_100480315	F003212	AGGAG	MKDKWLVTLEIDTYDGNPAKWDWKAIFTGDDDITIIESEYKGRVLPTSEGESND*
Ga0114346_100480316	F027417	GAGG	MSYDYRVTFVTDYLNITTNVCLELDETTGNCSDEAYEQATINGMNNIEDEIGKIDETIINDITVTLLLDDEEIELNEG*
Ga0114346_100480319	F018135	AGG	MMTVERVRHSGAVIVSQFIGEGAGEYLFSRTYYGYTIKQAKAQFKIALEGEGK*
Ga0114346_10048032	F026830	N/A	MVKGETVMPVPEGNITTSEILVPVVEEVVEVSTTEEVEETDDN*
Ga0114346_100480322	F033321	GGTGG	MSELEILRAEYERAANNPLFDKPADYCILLNLIQDRIDEIEGKYANF*
Ga0114346_10048038	F013279	AGGA	MQYDYRCPDCNAVLTVERSIHEEPREPTCFVCHISMVRKWDSPGVTFKGKGFYSTGG*