Scaffold Ga0114346_1003531

Overview

Basic Information

• Taxon OID: 3300008113
• Scaffold ID: Ga0114346_1003531
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10039
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001507	Metagenome / Metatranscriptome	681	Y
F010684	Metagenome / Metatranscriptome	300	Y
F061860	Metagenome / Metatranscriptome	131	Y
F063708	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_100353114	F010684	GAG	MPEFKVEIIFEPTGDYMTFRYEAESDNEADLCNEILNQLSIVSFKEKD*
Ga0114346_100353118	F061860	GAGG	MNNLTLEPRLQALVDMGESGTDILHGELKNMMYECEKELIPLLENSNEVGSDEDYEDTVQRLYNEGYMDGLVAAYQLTYELAFAIDERRKNGNV*
Ga0114346_100353119	F063708	N/A	MDLNTLIEYMKLHLISLEQDLEENPCSIHVVDIEGQIYATKHLLSVAEGMIE*
Ga0114346_100353122	F001507	AGG	MTQTYKPYTISELVMEIYEDNLSHFEFEENMGGEPCDCHLHITMETIVKYWGE*