Scaffold Ga0114346

Basic Information
Taxon OID	3300008113 Open in IMG/M
Scaffold ID	Ga0114346_1003437 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15900
Total Scaffold Genes	46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	37 (80.43%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

15900

Total Scaffold Genes

46 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

37 (80.43%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.8271	Long. (^o)	-83.1945	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.8271

Long. (^o)

-83.1945

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000450	Metagenome / Metatranscriptome	1126	Y
F002071	Metagenome / Metatranscriptome	596	Y
F003663	Metagenome / Metatranscriptome	474	Y
F008132	Metagenome / Metatranscriptome	338	Y
F061860	Metagenome / Metatranscriptome	131	Y
F085262	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_100343715	F003663	AGGTGG	MLSTAISLLSATKDSMFDEDIMGLAGELHTRRNELPDEIFAKYLFMYSSALSAKVADSVVKVLMTETEMSDLCATIDEMDNLSETILEENE*
Ga0114346_100343717	F085262	AGG	MSNLYSILSEMHPDGNFNEMDLWDAIAEAEGVDVNEIMDGDLTEYL*
Ga0114346_100343718	F002071	AGGA	MATTLEIGQTFKTTKSGVEGIIKSIEKHPSGVNRVLLDVNGTERWTSVSN*
Ga0114346_100343728	F000450	GGCGG	MGNRANFVFVQPNGESIVLYGHWAGHNMLANLAEAVAKAQPRWSDPSYATRIATSQMIGDSWGLETGWGLAVNEILDNEHKIPVIDFTQRTFSLHEEDSYHNQDNKVRGMKNEAIFTQDLATFCEKYSDSPLLSTV*
Ga0114346_10034373	F008132	AGG	MTKWDTIQADVSDMYAHIQEEEMYEQLMAEEEDVFGFTKAIQIDHLTDEQLDEVFNMFGDK*
Ga0114346_100343732	F061860	AGAAGG	MNTTELEPRLQKLIDLGESGTDILHGELKNMMYECEQILVPLLQNSNELGSDENYDDTVERLYNEGYMDALTAVYQLTYQLAFAINERTKAREATR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114346_1003437

Overview

Ecosystem & Geography

Associated Families

Sequences