Scaffold Ga0114346_1002236

Overview

Basic Information

• Taxon OID: 3300008113
• Scaffold ID: Ga0114346_1002236
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13137
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (70.59%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F006846	Metagenome / Metatranscriptome	363	Y
F014140	Metagenome / Metatranscriptome	265	Y
F026561	Metagenome / Metatranscriptome	197	Y
F038246	Metagenome	166	Y
F042904	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_100223611	F026561	GGA	MSDNGTGMDTPPNTTPSGAVTSREATRKSPRQGLKIDRNKHGIRRETSLTPKQPRKTGPKKV*
Ga0114346_100223621	F042904	N/A	MDNKQTVLEGIIEDVATDLYNKWSAALPENERNADAFSALSKNAHETTFFVIQNFMDRFNKAAEELKDK*
Ga0114346_100223626	F000671	GAGG	MEKILCYCCNKPKNKLNLKPSVLLSINLLMCETCISAKIEPRWVVILAGRSNGSDSVRDFILKRRYLGAEITASELII*
Ga0114346_100223628	F000473	AGG	MADKDHFKHGINQWTGEPNKPVFYTQEMAKKVREIPKPGMLLMDIAKYPEFLAIRLYESNFSQFDGSAKERVIDYVSKVKKLIESYGVRCELEGVPDARVL*
Ga0114346_10022363	F038246	AGGA	MGILDNLEAYLETAEKTEKCYYCQAIATYNDIAEVDRNYEIVGVCGCHAYKGLVS*
Ga0114346_100223631	F014140	N/A	MKTYLAKLSVEVEIEAFNETDAMDYVSDIFNIDDEIKKVNIVKIIEKNR*
Ga0114346_10022365	F006846	GAG	MLFNLVEKYLMRPKRLREAIQSVVRENDELLRRLAEYEEEGPTNLTWAEGDRWYGWTYNKEKKRYYFDDIGNESLMGLWEDQWARESDDNKA*