Scaffold Ga0114344_1025098

Overview

Basic Information

• Taxon OID: 3300008111
• Scaffold ID: Ga0114344_1025098
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2397
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F001019	Metagenome / Metatranscriptome	804	Y
F002387	Metagenome / Metatranscriptome	565	Y
F004666	Metagenome / Metatranscriptome	428	Y
F009685	Metagenome / Metatranscriptome	314	Y
F013184	Metagenome / Metatranscriptome	273	Y
F024786	Metagenome / Metatranscriptome	204	Y
F050154	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114344_10250981	F002387	GGAGG	MASFLEDVNQMVIDACYQDIAEQLLEDWINSNLDEGQYYADKQFAEMSGDKFVQSEFNKFYNLKEGDEDYL*
Ga0114344_102509810	F004666	GGA	MATKREYLAAKGITVGKRGRFSSAANKALQDAAAQGVVFQAEKPQPKK*
Ga0114344_10250982	F013184	GAGG	MRSYDFVIKLAGSVMANNENEAHNKINAHLDDLGKVDSTRYDLGWPDVSWDMEYDLC*
Ga0114344_10250984	F050154	GAG	MKLHLISLNQDLDKDLNVESKINIQGQIMATEHLLSVATDIMNASNERIYV*
Ga0114344_10250985	F000263	AGGA	MMTVEDIGLPPHLQRMVNAGVSGLDILHGELKNLMLIAEEDLASALEQEEKSEEAMDSMVRTECEGRLDTLVALYELTYQLSFAIGARNEA*
Ga0114344_10250987	F009685	AGGAGG	MKVTDQYVDSVLAEAQRLLWGGSETENIEAHNLIAKLIKDRLGDEQA*
Ga0114344_10250988	F001019	N/A	LAEVARAAKVGQREGDKMSNYEPSLEILEVNYGCSPGGVDMFEVYDKTDIPMSIPIYETESLTKAVKYCYNLGRDFTVRTLAEWESRELASL*
Ga0114344_10250989	F024786	GGAG	LPAYRVFGNKYQNYYTILEAADPYEAAEIANSLPETEWDPIATNDVIEATDVYLNEDTSMDLQLNI*