Scaffold Ga0114344_1000847

Overview

Basic Information

• Taxon OID: 3300008111
• Scaffold ID: Ga0114344_1000847
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28581
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (68.33%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Associated Families: 13

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000369	Metagenome / Metatranscriptome	1222	Y
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F001280	Metagenome / Metatranscriptome	732	Y
F006846	Metagenome / Metatranscriptome	363	Y
F008814	Metagenome / Metatranscriptome	327	Y
F013414	Metagenome / Metatranscriptome	271	Y
F014017	Metagenome / Metatranscriptome	266	Y
F016396	Metagenome / Metatranscriptome	247	Y
F026561	Metagenome / Metatranscriptome	197	Y
F038246	Metagenome	166	Y
F073544	Metagenome / Metatranscriptome	120	Y
F073565	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114344_100084710	F038246	AGGA	MGILDNLEAYLEAAEETDKCYYCQAIATYNDIAEVDRNYQIVGVCGCHAYKGLVS*
Ga0114344_100084713	F006846	N/A	MLTNLVERYLMRPKRLREAIQAVVHDRWYGWTYNSNAKRYYFDDIGNESLMGLWEDQWAREKEVVKSSLFENQVDFE*
Ga0114344_100084715	F026561	N/A	MSNFTKDDGTGMTPPGGAGSASGAVTSREATRKYPKQGVKPRIKIDVNSHGIRRETSLDPKPKKTRPKKV*
Ga0114344_100084716	F001280	GGCGG	MCIECGCEAFGSETGIVPVTITDVSRDGESGLTLDMTSTPEQTRQFINE*
Ga0114344_100084717	F073565	AGGAG	MTDGNNLTGFNEVKPATATAWNGEQYAADPASAFSSADKSTQDGSGLGNGGK*
Ga0114344_100084721	F014017	N/A	MDKLIEYLDESHRKKIADEIRYLELPPEWRPYEVIRYIVRIIEKQNG*
Ga0114344_100084725	F008814	N/A	MGEQLTILEEIIKEIGEELYQKWYNGLALEDRTEEASKAMSVNAGETAVWVIQTFMNKFNSAADELKGE*
Ga0114344_100084727	F016396	GAGG	VRKSERLRLLEMQVVRLEMMVELYTQSLTNLLQSQGLQTPTQLDAGKWYKAKLDKLDNE*
Ga0114344_100084731	F000671	GAGG	MEKILCYSCNKTKNKLSVRKSILIPINLLMCETCISSKFEPRWVIILAGRQLGPDSVKELIIKKRYCGNDIAASELLV*
Ga0114344_100084732	F073544	AGG	VREYYEVIKIVFIHAERVYGSVESLGLYASKVKYQKDGIEIEEVLENDEFTIMDEIVFEHVEESN*
Ga0114344_100084733	F000473	N/A	MEFINKDKDHFRYGVNEWTGDPNKPVFYTPEMAKRIREIKKPDMGLQMDIAKYPEFLAIRLYEDNFLQYEGIKKEMVIDYVGKVKKLIESYGVRCELEGVPSARILRSN*
Ga0114344_10008475	F013414	AGGCGG	MSKTREIKVAEDLVNLTEDHWFNPAILARYLTDQPFYTVDRIMELVAQIIRWEANRHNDELTTESGIYNSGQSCEGLFLAHELNQTLNKLIKQYKWENIKLPVDPDKVIKKLPKAEEQSYRYSWLHDKDNRQHVTIDHPFI*
Ga0114344_100084756	F000369	N/A	MSEIELSQHFDRMNRVVEELLKGSTPTQIATITGIQRKEVLELIDDWKDVVHNDNNIRDRAREAISGADQHYAMLIKEAWKTVEDADTSGQLGIKSGALKLIADIETKRIAMLQSIGVLENNEIASQIAETERKQEVLVKILKEVTSTCPKCKMDVAKRLSQITGVIESVPVEASDVV*