Basic Information | |
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Taxon OID | 3300008110 Open in IMG/M |
Scaffold ID | Ga0114343_1124581 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 858 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 6 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000263 | Metagenome / Metatranscriptome | 1424 | Y |
F033037 | Metagenome / Metatranscriptome | 178 | Y |
F038241 | Metagenome / Metatranscriptome | 166 | Y |
F050154 | Metagenome / Metatranscriptome | 145 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114343_11245812 | F038241 | GAGG | MLGYTKEDLDQMSNAVHDAKLFYIMNSDVEQVDKDPLVEGLLKANDFLQGLWAEGYFD* |
Ga0114343_11245813 | F050154 | N/A | MKLHLISLNQDMDKDLNVESKINIQGQIMATEHLLSVATDIMNNSNERHE* |
Ga0114343_11245814 | F000263 | AGG | METLELPAHLQRMVNAGVSGLDILHGELKNLMLMAESDLAEASEQEQRSEEAMDSMVRTECEGRLDALVAVYELTYQLSFAIGARDEATR* |
Ga0114343_11245815 | F033037 | GGAG | MKPQDKDKLNECLKILDSTDLGLSLVWLWTWSTINNIFEDETYKQNCTIDEMWDH |
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