Scaffold Ga0114343_1039023

Overview

Basic Information

• Taxon OID: 3300008110
• Scaffold ID: Ga0114343_1039023
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1914
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F012975	Metagenome / Metatranscriptome	275	Y
F014140	Metagenome / Metatranscriptome	265	Y
F073544	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114343_10390233	F073544	AGG	VREYYEIIKIVFIHSERVYGSVESLGLYASKVKYQKDGIEIEEVLENDEFTIMDEIIFEHVEESN*
Ga0114343_10390234	F000473	AGG	MEFINKDKNHFKYGVNEWTGEPNKPVFYTPEMAKRIREIKKPDMSLQMDIARYPEFLAIRLYEDNFLQYQGVKKEMVIDYVGKVKKLIESYGVRCELEGVPSARILRNN*
Ga0114343_10390236	F012975	AGGA	MLHLTLKGVEVFMERSKTKSQESYWDNYDLLIWKENPGGFTSLKGIFRKNQWGVAERIAVNEQGVWKLPTKYVKHFK*
Ga0114343_10390238	F014140	N/A	MNTYKVKMDVELEVIAFSENDARDYVGDIFNIDDEIKKVNIIKITEKNK*