Scaffold Ga0114341_10016041

Overview

Basic Information

• Taxon OID: 3300008108
• Scaffold ID: Ga0114341_10016041
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5469
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021112	Metagenome	220	Y
F047674	Metagenome / Metatranscriptome	149	Y
F070118	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114341_100160414	F070118	N/A	MSDLDFKPINCRKCGNLIWAGVSASSRCDIKLDTARLNLRDEVLALTAGLATYQVHRTAVSFEATRRTAGRMKVAEPIVLATHTCRALTVFAEEAPDYFNRVKLSTTSEKVPF*
Ga0114341_100160415	F021112	N/A	MLAADHIAPGRSGSGAASAERSIGVNVNALDYSMAIELLGILHSWEAEIRAARRLTPPALLKKEPTTDAEVQATCDFHLAHLDWTMGQEWAGDFYNEVKELHSKGMAAAKQFVEQPRRIPCPTDDCHKFVVIDAENLMDDVSCYGCRQSWTVLRLVALAMSNPTRKFFLDVEAIALWLGITQRQVYKIVKANSIERRGSLYDLAGVIASR*
Ga0114341_100160416	F047674	N/A	MDMDTETIEEVDEALSHAIITRANTIDSKKHIVDKFIDDLLDSRLELTKC*