Scaffold Ga0114341_10010299

Overview

Basic Information

• Taxon OID: 3300008108
• Scaffold ID: Ga0114341_10010299
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7237
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001957	Metagenome / Metatranscriptome	611	Y
F043407	Metagenome / Metatranscriptome	156	Y
F076100	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114341_1001029911	F076100	GAG	MKYITNKFDSIRLPVEEGLLEWLQAKYPASKYFIKET*
Ga0114341_1001029914	F001957	AGGTGG	MNSVDMANNLIFRARNLNEFTVTTEVPDDFRFNGEIPFDMQIKDSIITAKVWAVDFDEAAKRLDDFLGTCK*
Ga0114341_100102994	F043407	GGA	MSTISKNAVSNGLVGATVSVGYGAIPPATPLSVGQVYTTNNTGSAGQFLTSTGSNGTSWSNPNDNVMVVSQNPPALEVKGKMIINGQDLEERLDTIEKVLQIPERDVKLEKKHPKLKKLYDEYINALGKYRTFEAIKGED*