Scaffold Ga0114341_10004724

Overview

Basic Information

• Taxon OID: 3300008108
• Scaffold ID: Ga0114341_10004724
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11969
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (34.38%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020891	Metagenome	221	N
F034162	Metagenome	175	Y
F105021	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114341_1000472411	F105021	N/A	MKTINKLLARWGYKISKTDPAAEQSDLQLAYAALEAERNELQARNKELTRKLAARTSGEWYWRKQAKEARR*
Ga0114341_1000472417	F034162	N/A	MRWVEASYRLPAAANLPVEVELAGGGTERRDTVSGDWRPVVRWRTVIDTEPKQRKKKA*
Ga0114341_1000472429	F020891	N/A	MTFAEHAFAACARKGKELGRRLNKDEWLATMQAAYDSYPHGGLLVSDSPKPKKAAPKVVEEDWLGQLEANPAYAGIDIRRELGKAQAWASVRGVGVSQRRFVNWLNKAMTERPIQYSGAGKTSFAPVQPQGPAEPAGWQAWVRENSADPSNADKPWSALDASAQRYIISKLNGPSTVHPPRPSPRPVLDREEVSDEDIPVARKANAGAVLVGSLLQGYR*