Scaffold Ga0114341_10000927

Overview

Basic Information

• Taxon OID: 3300008108
• Scaffold ID: Ga0114341_10000927
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31959
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (29.41%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009202	Metagenome / Metatranscriptome	321	N
F015723	Metagenome / Metatranscriptome	252	Y
F015858	Metagenome / Metatranscriptome	251	Y
F033779	Metagenome / Metatranscriptome	176	Y
F039112	Metagenome	164	Y
F093771	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114341_1000092737	F009202	N/A	MYPSEELHDLYIREKQLMLSGTAMWLAKQAADKASGREVQDEMIDHLMNVHHADQLLQQFIDYRLFANRKLNEVMLANAQLRVNNEEMILEIERLQRIIEDNI*
Ga0114341_1000092739	F015723	N/A	MAKIISITPKGQWQDLFKLELRFDNGDFGTAFAKSPTPSYAVGDEVDYTKNEKGTIKINKPFTGGFSGGNGGSFANTSKVSGDERSASIIRQVALKAAVEYACAAGHDVNTILANAATFNEWMNGNQSAATHQEHFASRNESPF*
Ga0114341_1000092740	F039112	N/A	LHICHVKQKPIIMTLSLSQDTYSQTIVAQQAQIKALQDKVQELNARIEVLEQQAVLFI*
Ga0114341_1000092743	F033779	N/A	MRHNRPVTLTILTAAILAAVSGCRTAQPILQSVIVKDTVIVTETKYLLDTLEVLKDTTIYQDKVRLQLKYIDRKVVVEAMCEPDTIRVTQTKLLTKQEPKKKSWESYVGMLAFILTFAYVVKRWVDKLTA*
Ga0114341_1000092746	F093771	N/A	MTKESADSVITSWSLTGAGLLVGYVHQALGLLVLVASLAYTLWKWRRDWLKEKNNAN*
Ga0114341_1000092749	F015858	N/A	MNLISWGIVYCSSWFGQVDETTLSIQNESAPPCFAPVNEIADEFVDRVTADGGVVEGYDCLVGALQDLGEDTYYDIFDTYIQRMTDDGATLEGEECLIDQLFILN*