Scaffold Ga0114340_1048198

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1048198
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1875
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001019	Metagenome / Metatranscriptome	804	Y
F059952	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10481981	F059952	N/A	QDIAEQLLEDWINNNLDEGQYYADKQFAEMSGDKFIYDEFNKFYELKEGDEGYLC*
Ga0114340_10481984	F000263	AGG	MNSEDIGLPPHLQRMVNAGVSGLDIIHGELKNLMLIAERDLSSALEQELLSEEAMDSMVRTECEGRLDTLVALYELTYQLSFAIGGKND*
Ga0114340_10481985	F001019	GGGGG	MTNYEPSLEILEVEYSCSPGGIDMFEVYDKTDIPMSVPIYETESLTEAVQFCYNLGKDFVVRTLAEWHEKELAYGY*
Ga0114340_10481987	F000441	AGGAGG	MSDIYINEQLNKAQQLLWGGSETENIEAHNIIAKLIKDRMSDKGE*
Ga0114340_10481988	F000852	AGGA	MTTKREYLKTKGITVGARGRFSGAAKVALQEAEKQGIKFTAETPVKK*