Scaffold Ga0114340_1026467

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1026467
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4466
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002071	Metagenome / Metatranscriptome	596	Y
F003663	Metagenome / Metatranscriptome	474	Y
F017829	Metagenome / Metatranscriptome	238	Y
F049621	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10264672	F017829	AGGA	MKNRYRVEIYDANKFNDVTIYSEQGVDKEYLTELVFSNLNKFSGKVNAYVFDNVKKKKTTAMFLDEAIVNFNKQMLSKASRIEFGI*
Ga0114340_10264674	F002071	AGGA	MATTLEVGQTFTTTQTGITGVIKAVDNHPSGVNRILLDVNGTERWTSAPAN*
Ga0114340_10264676	F003663	AGGTGG	MLSTALDILSVTKDSMFDEDIMGMAGELHTRRNELPDEIFAKYLFMYSSALSAKVADSVTKILLTAEEMSDLCATIDEMDNLSETILEEDNNGE*
Ga0114340_10264677	F049621	N/A	MTEIKYLNELINSVVGDENQKKSAKEYLAEVDPDIWSD*