Scaffold Ga0114340_1022328

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114340_1022328

Scaffold Ga0114340_1022328

Overview

Basic Information
Taxon OID	3300008107 Open in IMG/M
Scaffold ID	Ga0114340_1022328 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2970
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (55.56%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)		Depth (m)	4.9
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F082599	Metagenome	113	N
F083919	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10223283	F082599	N/A	MGKVRSNEMSYTVHEIADLNESIDKAILSLKAANNILEEMMATGRIYVEGGEE*
Ga0114340_10223285	F083919	AGGAG	MSYEPPLEDDVALDKDIEDEDDGYQEPDRMWGDE*

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