Scaffold Ga0114340_1021029

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1021029
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5368
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002598	Metagenome / Metatranscriptome	544	Y
F003690	Metagenome / Metatranscriptome	473	Y
F010085	Metagenome / Metatranscriptome	308	Y
F080026	Metagenome / Metatranscriptome	115	Y
F084151	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_102102910	F084151	AGAAG	MTIEYSLWQGSRLLSIGNTATSIKDIDKVVAELNSSDIAKKVKFSANVMKVEVK*
Ga0114340_102102912	F003690	GGAG	MIPSGFELVISNEYGLEFDSFLGAIYLPWHTIIIITLSVIAYKIYKRFYK*
Ga0114340_102102916	F002598	AGAAGG	MATKLYTIESLLVGKNYRSTNRHFSGEIVSAEPRPEIWYGENTEAFLIEVNAGGLRNKFA
Ga0114340_10210292	F010085	AGGAGG	MKKIQYVSKYIRLSEEGLVPRLECPMDQGPLFCNISMNDEIYLYCLSCNYKQYIGNATYDKIVSLVEKISNEA*
Ga0114340_10210297	F080026	AGGA	MAYSQDQMEFAHMVAFRLKEILEVCPNVDEKSTCWTVHEKAHQRCYDLMVLLAEITNLPEYLEFLGNHPETKVNPYGFITALPPAKRFKEDPETDIDFVQDIVDLEQ*