Scaffold Ga0114340_1019423

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1019423
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6843
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059778	Metagenome	133	N
F096916	Metagenome	104	N
F100721	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_101942312	F100721	N/A	MDFKRGETSMASASKMKLQDCPVIKITWIDAQADAGWDEPKVDIAQCVTVGFLVGETDDAICVAGTVSDHECNNRISIPKSWILTQQLEETKNETAISKSKGKKPAKVGSSTVAKKVSTTTPRRPRKHVNGSRRGRCQVKSSGKRRNTLPV*
Ga0114340_101942314	F096916	GAGG	MKVLEMTELKDGGAELQIDMTEEERCFMIEFGFNQLLKQSLGMFNEQFEPKKGTKNVKSTSKSKR*
Ga0114340_10194236	F059778	AGGAG	MKDDLLEKALKYAQHDDYHVTKRIITDLCNEIDRLRELNKDVFSRIQDNKEMFNNAERYLWLRNSAWDVPTTATAPIVVNCDNRMSQFEYLLIVELVAVVFYISGMISWMK*