NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F096916

Metagenome Family F096916

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F096916
Family Type Metagenome
Number of Sequences 104
Average Sequence Length 61 residues
Representative Sequence MKVLEMKEREDGGAELQIDMTEEERCFMIEFGFNQLLRNSIDKFEEQFKPKKGTKNVTRK
Number of Associated Samples 68
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 77.88 %
% of genes near scaffold ends (potentially truncated) 33.65 %
% of genes from short scaffolds (< 2000 bps) 72.12 %
Associated GOLD sequencing projects 65
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (51.923 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake
(26.923 % of family members)
Environment Ontology (ENVO) Unclassified
(66.346 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(68.269 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 28.33%    β-sheet: 25.00%    Coil/Unstructured: 46.67%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 104 Family Scaffolds
PF13482RNase_H_2 23.08
PF11753DUF3310 7.69
PF027395_3_exonuc_N 4.81
PF01612DNA_pol_A_exo1 1.92
PF01507PAPS_reduct 1.92
PF02867Ribonuc_red_lgC 1.92
PF08291Peptidase_M15_3 0.96
PF05050Methyltransf_21 0.96
PF13155Toprim_2 0.96
PF00476DNA_pol_A 0.96
PF04166PdxA 0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 104 Family Scaffolds
COG02585'-3' exonuclease Xni/ExoIX (flap endonuclease)Replication, recombination and repair [L] 4.81
COG0209Ribonucleotide reductase alpha subunitNucleotide transport and metabolism [F] 1.92
COG0749DNA polymerase I, 3'-5' exonuclease and polymerase domainsReplication, recombination and repair [L] 0.96
COG19954-hydroxy-L-threonine phosphate dehydrogenase PdxACoenzyme transport and metabolism [H] 0.96


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A51.92 %
All OrganismsrootAll Organisms48.08 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002212|metazooDRAFT_1393097All Organisms → Viruses → Predicted Viral1280Open in IMG/M
3300003277|JGI25908J49247_10003837All Organisms → cellular organisms → Bacteria4811Open in IMG/M
3300003277|JGI25908J49247_10078773All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage815Open in IMG/M
3300003393|JGI25909J50240_1002220All Organisms → Viruses → Predicted Viral4985Open in IMG/M
3300003394|JGI25907J50239_1023566All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1353Open in IMG/M
3300004112|Ga0065166_10011079All Organisms → cellular organisms → Bacteria2440Open in IMG/M
3300004240|Ga0007787_10021669All Organisms → Viruses → Predicted Viral2701Open in IMG/M
3300004240|Ga0007787_10651494Not Available527Open in IMG/M
3300005517|Ga0070374_10065605All Organisms → Viruses → Predicted Viral1891Open in IMG/M
3300005525|Ga0068877_10021032All Organisms → cellular organisms → Bacteria → Proteobacteria4597Open in IMG/M
3300005527|Ga0068876_10553104Not Available627Open in IMG/M
3300005527|Ga0068876_10601384Not Available595Open in IMG/M
3300005528|Ga0068872_10277602Not Available934Open in IMG/M
3300005528|Ga0068872_10739901Not Available514Open in IMG/M
3300005581|Ga0049081_10032672All Organisms → cellular organisms → Bacteria1976Open in IMG/M
3300005581|Ga0049081_10211331Not Available692Open in IMG/M
3300006802|Ga0070749_10096090All Organisms → cellular organisms → Bacteria1756Open in IMG/M
3300006875|Ga0075473_10162018Not Available900Open in IMG/M
3300007544|Ga0102861_1044289Not Available1149Open in IMG/M
3300007639|Ga0102865_1013646All Organisms → Viruses → Predicted Viral2273Open in IMG/M
3300008107|Ga0114340_1019423All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage6843Open in IMG/M
3300008107|Ga0114340_1036703All Organisms → Viruses2212Open in IMG/M
3300008107|Ga0114340_1043018All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2010Open in IMG/M
3300008110|Ga0114343_1050427All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1612Open in IMG/M
3300008114|Ga0114347_1236453Not Available574Open in IMG/M
3300008117|Ga0114351_1015903All Organisms → cellular organisms → Bacteria5156Open in IMG/M
3300008120|Ga0114355_1181364All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales705Open in IMG/M
3300008261|Ga0114336_1015778All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage6732Open in IMG/M
3300008263|Ga0114349_1032395Not Available2605Open in IMG/M
3300008266|Ga0114363_1049954All Organisms → Viruses → Predicted Viral1669Open in IMG/M
3300008266|Ga0114363_1062826All Organisms → Viruses → Predicted Viral1437Open in IMG/M
3300008266|Ga0114363_1123361Not Available897Open in IMG/M
3300008266|Ga0114363_1132004Not Available852Open in IMG/M
3300008266|Ga0114363_1157563Not Available746Open in IMG/M
3300008266|Ga0114363_1206534Not Available597Open in IMG/M
3300008266|Ga0114363_1243281Not Available512Open in IMG/M
3300008448|Ga0114876_1014874All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage4237Open in IMG/M
3300008448|Ga0114876_1056886All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1731Open in IMG/M
3300008450|Ga0114880_1039561All Organisms → Viruses → Predicted Viral2056Open in IMG/M
3300008450|Ga0114880_1198291Not Available675Open in IMG/M
3300008450|Ga0114880_1199014Not Available673Open in IMG/M
3300008450|Ga0114880_1246986Not Available560Open in IMG/M
3300009075|Ga0105090_10656046Not Available637Open in IMG/M
3300009111|Ga0115026_10002948Not Available6253Open in IMG/M
3300009155|Ga0114968_10129016All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales1519Open in IMG/M
3300009170|Ga0105096_10015494All Organisms → Viruses → Predicted Viral3676Open in IMG/M
3300013004|Ga0164293_10407145Not Available915Open in IMG/M
3300013004|Ga0164293_10956805Not Available536Open in IMG/M
3300013005|Ga0164292_10160775All Organisms → Viruses → Predicted Viral1633Open in IMG/M
3300013005|Ga0164292_10595912All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage714Open in IMG/M
3300013005|Ga0164292_10741357Not Available624Open in IMG/M
3300013006|Ga0164294_10659956Not Available707Open in IMG/M
3300013014|Ga0164295_10020856All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage5053Open in IMG/M
3300017761|Ga0181356_1215230Not Available562Open in IMG/M
3300017774|Ga0181358_1197897Not Available659Open in IMG/M
3300017777|Ga0181357_1334862Not Available506Open in IMG/M
3300019784|Ga0181359_1045024All Organisms → Viruses → Predicted Viral1706Open in IMG/M
3300019784|Ga0181359_1127349All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage902Open in IMG/M
3300019784|Ga0181359_1133067Not Available874Open in IMG/M
3300019784|Ga0181359_1207367Not Available626Open in IMG/M
3300020159|Ga0211734_10355863Not Available6101Open in IMG/M
3300020172|Ga0211729_11278591Not Available561Open in IMG/M
3300020530|Ga0208235_1040682Not Available546Open in IMG/M
3300021961|Ga0222714_10025650All Organisms → Viruses → Predicted Viral4494Open in IMG/M
3300022179|Ga0181353_1010772All Organisms → Viruses → Predicted Viral2299Open in IMG/M
3300022190|Ga0181354_1074506All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium1124Open in IMG/M
3300022190|Ga0181354_1133135Not Available790Open in IMG/M
3300022190|Ga0181354_1191981Not Available614Open in IMG/M
3300022407|Ga0181351_1080498All Organisms → Viruses → Predicted Viral1299Open in IMG/M
3300023174|Ga0214921_10060318All Organisms → Viruses → Predicted Viral3215Open in IMG/M
3300025635|Ga0208147_1039581All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1226Open in IMG/M
3300025889|Ga0208644_1032078All Organisms → cellular organisms → Bacteria3132Open in IMG/M
3300026931|Ga0209850_1001107All Organisms → Viruses → Predicted Viral2541Open in IMG/M
3300027659|Ga0208975_1025367Not Available1919Open in IMG/M
3300027679|Ga0209769_1047030All Organisms → Viruses → Predicted Viral1463Open in IMG/M
3300027756|Ga0209444_10009866All Organisms → Viruses → Predicted Viral4933Open in IMG/M
3300027759|Ga0209296_1083766All Organisms → Viruses → Predicted Viral1563Open in IMG/M
3300027785|Ga0209246_10090465All Organisms → Viruses → Predicted Viral1196Open in IMG/M
3300027797|Ga0209107_10048336Not Available2404Open in IMG/M
3300027805|Ga0209229_10400201Not Available596Open in IMG/M
(restricted) 3300028571|Ga0247844_1180831Not Available820Open in IMG/M
3300031758|Ga0315907_10723942Not Available753Open in IMG/M
3300031787|Ga0315900_10145709All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2200Open in IMG/M
3300031787|Ga0315900_10550757All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Sutterellaceae → Parasutterella → Parasutterella excrementihominis858Open in IMG/M
3300031787|Ga0315900_10991203Not Available553Open in IMG/M
3300031857|Ga0315909_10435305Not Available927Open in IMG/M
3300031951|Ga0315904_10129845All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2592Open in IMG/M
3300031951|Ga0315904_10188522All Organisms → cellular organisms → Bacteria2038Open in IMG/M
3300031951|Ga0315904_10212316All Organisms → Viruses → Predicted Viral1889Open in IMG/M
3300031951|Ga0315904_10383388Not Available1280Open in IMG/M
3300031951|Ga0315904_10998668Not Available664Open in IMG/M
3300031951|Ga0315904_11353344Not Available534Open in IMG/M
3300031963|Ga0315901_10783854Not Available694Open in IMG/M
3300031963|Ga0315901_11043256Not Available567Open in IMG/M
3300032050|Ga0315906_10546167Not Available968Open in IMG/M
3300032050|Ga0315906_10593790Not Available913Open in IMG/M
3300032050|Ga0315906_11252920Not Available533Open in IMG/M
3300033978|Ga0334977_0467525Not Available579Open in IMG/M
3300033996|Ga0334979_0133512All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1516Open in IMG/M
3300033996|Ga0334979_0532846Not Available632Open in IMG/M
3300034061|Ga0334987_0255149Not Available1192Open in IMG/M
3300034062|Ga0334995_0092540All Organisms → Viruses → Predicted Viral2316Open in IMG/M
3300034284|Ga0335013_0200957Not Available1322Open in IMG/M
3300034356|Ga0335048_0529965Not Available558Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake26.92%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater15.38%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton15.38%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater15.38%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake5.77%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous3.85%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic2.88%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment1.92%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake1.92%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater1.92%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine1.92%
WetlandEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland0.96%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater0.96%
LakeEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Lake0.96%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment0.96%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment0.96%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water0.96%
SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sand0.96%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002212Freshwater microbial communities from San Paulo Zoo lake, Brazil - JAN 2013EnvironmentalOpen in IMG/M
3300003277Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SDEnvironmentalOpen in IMG/M
3300003393Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DDEnvironmentalOpen in IMG/M
3300003394Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SNEnvironmentalOpen in IMG/M
3300004112Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2)EnvironmentalOpen in IMG/M
3300004240Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SNEnvironmentalOpen in IMG/M
3300005517Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4)EnvironmentalOpen in IMG/M
3300005525Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaGEnvironmentalOpen in IMG/M
3300005527Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaGEnvironmentalOpen in IMG/M
3300005528Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaGEnvironmentalOpen in IMG/M
3300005581Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRFEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006875Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNAEnvironmentalOpen in IMG/M
3300007544Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3EnvironmentalOpen in IMG/M
3300007639Estuarine microbial communities from the Columbia River estuary - metaG 1449C-02EnvironmentalOpen in IMG/M
3300008107Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NAEnvironmentalOpen in IMG/M
3300008110Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NAEnvironmentalOpen in IMG/M
3300008114Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NAEnvironmentalOpen in IMG/M
3300008117Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NAEnvironmentalOpen in IMG/M
3300008120Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NAEnvironmentalOpen in IMG/M
3300008261Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NAEnvironmentalOpen in IMG/M
3300008263Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-53-LTREnvironmentalOpen in IMG/M
3300008266Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NAEnvironmentalOpen in IMG/M
3300008448Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigsEnvironmentalOpen in IMG/M
3300008450Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigsEnvironmentalOpen in IMG/M
3300009075Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015EnvironmentalOpen in IMG/M
3300009111Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1EnvironmentalOpen in IMG/M
3300009155Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaGEnvironmentalOpen in IMG/M
3300009170Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015EnvironmentalOpen in IMG/M
3300013004Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaGEnvironmentalOpen in IMG/M
3300013005Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaGEnvironmentalOpen in IMG/M
3300013006Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaGEnvironmentalOpen in IMG/M
3300013014Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES006 metaGEnvironmentalOpen in IMG/M
3300017761Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.NEnvironmentalOpen in IMG/M
3300017774Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.DEnvironmentalOpen in IMG/M
3300017777Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300019784Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300020159Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1EnvironmentalOpen in IMG/M
3300020172Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1EnvironmentalOpen in IMG/M
3300020530Freshwater microbial communities from Lake Mendota, WI - 22OCT2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300021961Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3DEnvironmentalOpen in IMG/M
3300022179Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.NEnvironmentalOpen in IMG/M
3300022190Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.NEnvironmentalOpen in IMG/M
3300022407Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300023174Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505EnvironmentalOpen in IMG/M
3300025635Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025889Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)EnvironmentalOpen in IMG/M
3300026931Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T2_23-Sept-14 (SPAdes)EnvironmentalOpen in IMG/M
3300027659Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027679Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (SPAdes)EnvironmentalOpen in IMG/M
3300027756Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN (SPAdes)EnvironmentalOpen in IMG/M
3300027759Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027785Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027797Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)EnvironmentalOpen in IMG/M
3300027805Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)EnvironmentalOpen in IMG/M
3300028571 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch201714.5m_1EnvironmentalOpen in IMG/M
3300031758Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123EnvironmentalOpen in IMG/M
3300031787Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114EnvironmentalOpen in IMG/M
3300031857Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125EnvironmentalOpen in IMG/M
3300031951Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120EnvironmentalOpen in IMG/M
3300031963Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116EnvironmentalOpen in IMG/M
3300032050Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122EnvironmentalOpen in IMG/M
3300033978Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002EnvironmentalOpen in IMG/M
3300033996Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004EnvironmentalOpen in IMG/M
3300034061Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028EnvironmentalOpen in IMG/M
3300034062Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045EnvironmentalOpen in IMG/M
3300034284Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jul2016-rr0075EnvironmentalOpen in IMG/M
3300034356Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jun2014-rr0152EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
metazooDRAFT_139309723300002212LakeMKVLEMKERKDGGADLQLDMSEEERCFFIEFGFNAMLRKSLDDFNSQFETKKGTRNVSTKSKSK*
JGI25908J49247_1000383753300003277Freshwater LakeMMKVLEMKEREDGGAELQIDMTEEERCFMIEXGFNQXLRXSIDKFEKQFKPKKGXKNVTRKN*
JGI25908J49247_1007877313300003277Freshwater LakeMKLVELKERQDGGAELQLDMTDEERCFLIEFGFNQLLRTSIDKFEKQFKPKKGIKNVKS
JGI25909J50240_100222043300003393Freshwater LakeMMKVLEMKEREDGGAELQIDMTEEERCFMIEFGFNQVLRHSIDKFEKQFKPKKGNKNVTRKN*
JGI25907J50239_102356633300003394Freshwater LakeMKVLEMKEREDGGAELQIDMTEEERCFMIEFGFNQVLRHSIDKFEKQFKPKKGNKNVTRKN*
Ga0065166_1001107943300004112Freshwater LakeMKVLEMTEREDGGAELQVDMTEQERCFFIEFGFNQMLKQSLGMFNEQFEPKKGTKNVKSTSKSKR*
Ga0007787_1002166943300004240Freshwater LakeMKLVEMKERKDGGADLQIDMSEEERCFMIEFGFNQLLRNTIDKFEEQFKTKKGTKNATR*
Ga0007787_1065149423300004240Freshwater LakeEEQMKVLEMKEREDGGAELQIDMTEQERCFFIEFGFNQMLKQSLGMFNEQFEPKKGIKNVKSTSKSKR*
Ga0070374_1006560543300005517Freshwater LakeMKVLEMKEREDGGAELQIDMTEDERCFMIEFGFNQLLRNSIDKFEKQFKPEKGIKNVKSTSKSK*
Ga0068877_1002103273300005525Freshwater LakeMKVLEMKEREDGGAELQVDMTEQERCFFIEFGFNQMLKQSLGMFNEQFEPKKGTKNVKSTSKSKR*
Ga0068876_1055310423300005527Freshwater LakeMKVLEMKELEDGGAELQIDMTEEERCFMIEFGFNQLLKQSLGMFNEQFEPKKGTKNVKSTSKSKR*
Ga0068876_1060138423300005527Freshwater LakeMKVLEMTELEDGGAELQIDMTEEERCFMIEFGFNQLLKQSLGMFNEQFEPKKGTKNVKSTSKSKR*
Ga0068872_1027760223300005528Freshwater LakeMKVLEMTERKDGGADLQIDMTEDERCFFIEFGFNQMLKQTLGMFNEQFEPKKGIKNVKSTSKSKR*
Ga0068872_1073990113300005528Freshwater LakeEMKELEDGGAELQIDMTEEERCFMIEFGFNQLLKQSLGMFNEQFEPKKGTKNVKSTSKSKR*
Ga0049081_1003267243300005581Freshwater LenticMKLVELKERQDGGAELQLDMTDKERCFLIEFGFNQLLRTSIDKFEKQFKPKKGIKNVKSTSKSK*
Ga0049081_1021133123300005581Freshwater LenticMKVLEMKELKDGGAELQIDMTEEERCFMIEFGFNQLLRNSIDKFEKQFKTKKGNKNVTRKN*
Ga0070749_1009609033300006802AqueousMKVLEMKERKDGGADLQLDMTEEERCFFIEFGFNAMLRKSLDEFNAQFVPKKGTRNVSTKSKSK*
Ga0075473_1016201833300006875AqueousMKVLEMKERKDGGADLQLDMTEEERCFFIEFGFNAMLRKSLDEFNAQFVPKKGTKNVSTKSKSK*
Ga0102861_104428933300007544EstuarineMMKVLEMKEREDGGAELQIDMTEEERCFMIEFGFNQVLRHSIDKFEKQFKPKKGNKNVTR
Ga0102865_101364633300007639EstuarineVFYLTEEMMKVLEMKEREDGGAELQIDMTEEERCFMIEFGFNQVLRHSIDKFEKQFKPKKGNKNVTRKN*
Ga0114340_1019423143300008107Freshwater, PlanktonMKVLEMTELKDGGAELQIDMTEEERCFMIEFGFNQLLKQSLGMFNEQFEPKKGTKNVKSTSKSKR*
Ga0114340_103670313300008107Freshwater, PlanktonMKVLEMKERKDGGADLQIDMTEDERCFFIEFGFNQMLKQSLGMFNEQFEPQKGTKNVKSTSKSKR*
Ga0114340_104301823300008107Freshwater, PlanktonMKVLEMKEREDGGAELQVDMTEQERCFFIEFGFNQMLKQTLGMFNEQFEPKKGIKNVKSTSKSKR*
Ga0114343_105042713300008110Freshwater, PlanktonMKVLEMKEREDGGAELQVDMTEQERCFFIEFGFNQMLKQSLGMFNEQFEPKKGIKNVKSTSKSKR*
Ga0114347_123645313300008114Freshwater, PlanktonMKVLEMTEREDGGAELQVDMTEQERCFFIEFGFNQMLKQSLGMFNEQFEPKKGIKNVKSTSKSKR*
Ga0114351_101590373300008117Freshwater, PlanktonMKVLEMTEREDGGAELQVDMTEQERCFFIEFGFNQMLKQSLGMFNEKFEPKKGTKNVKSTSKSKR*
Ga0114355_118136433300008120Freshwater, PlanktonMKVLEMKERKDGGADLQIDMTEEERCFMIEYGFNAMLRATIDKFNEQFTPPKGTKN
Ga0114336_101577863300008261Freshwater, PlanktonMMKLLELKEREDGGAELQLDMTDEERCFLIEFGFNQLLRSSIDKFENKFKPKKGIKNVKSTSKSK*
Ga0114349_103239533300008263Freshwater, PlanktonMKVLEMTELEDGGAELQVDMTEQERCFFIEFGFNQMLKQSLGMFNEQFEPKKGTKNVKSTSKSKR*
Ga0114363_104995413300008266Freshwater, PlanktonKVLEMKERKDGGADLQLDMTEEERCFFIEFGFNAMLRKSLDEFNAQFVPKKGTRNVSTKSKSK*
Ga0114363_106282643300008266Freshwater, PlanktonMMKVLEMKEREDGGAELQIDMTEDERCFMIEFGFNQLLRNSIDKFEEQFKPKKGNKNVTRKN*
Ga0114363_112336133300008266Freshwater, PlanktonMKVLEMKERKDGGADLQIDMTEEERCFMIEYGFNAMLRATIDKFNEQFIPPKGTKNVKSTSKSKR*
Ga0114363_113200433300008266Freshwater, PlanktonMKVIEMKERKDGGADLQVDMTEEERCFMIEYGFNAMLRATIDKFNEQFTPPKGTKNVKSTSKSK*
Ga0114363_115756313300008266Freshwater, PlanktonMKVLEMKEREDGGAELQVDMTEQERCFFIEFGFNQMLKQSLGMFNEQFEPKK
Ga0114363_120653423300008266Freshwater, PlanktonMKVLEMKERKDGGADLQIDMTEDERCFFIEFGFNQMLKQTLGMFNEQFEPKKGIKNVKSTSKSKR*
Ga0114363_124328123300008266Freshwater, PlanktonMMKVLEMKELKDGGAELQIDMTEEERCFMIEFGFNQLLRNSIDKFEKQFKTKKGNKNVTRKN*
Ga0114876_101487413300008448Freshwater LakeMMKVLEMKELKDGGAELQIDMTEEERCFMIEFGFNQVLRHSIDKFEKQFKPKKG
Ga0114876_105688643300008448Freshwater LakeMMKVLEMKEREDGGAELQIDMTEEERCFMIEFGFNQVLRHSIDKFEKQFKPKKG
Ga0114880_103956143300008450Freshwater LakeMKVLEMKEREDGGAELQIDMTEEERCFMIEFGFNQLMRNSIDKFEKQFKPKKGNKNVTRKN*
Ga0114880_119829123300008450Freshwater LakeMKLVELKERQDGGAELQLDMTDEERCFLIEFGFNQLLRNSIDKFEKQFKPKKGIKNVKSTSKSK*
Ga0114880_119901443300008450Freshwater LakeEREDGGAELQVDMTEQERCFFIEFGFNQMLKQSLGMFNEQFEPKKGTKNVKSTSKSKR*
Ga0114880_124698623300008450Freshwater LakeMMKVLEMKEREDGGAELQIDMTEEERCFMIEFGFNQLLRNSIDKFEEQFKPKKGTKNVTRKN*
Ga0105090_1065604633300009075Freshwater SedimentREDGGAELQIDMTEDERCFMIEFGFNQLLRNSIDKFEEQFKPKKGNKNVTRKN*
Ga0115026_1000294863300009111WetlandMKILEMKERKDGGADLQIDMTEDERCFMIEYGFNAMLRKTIDQFNDQFQPKKGRKNASCKD*
Ga0114968_1012901613300009155Freshwater LakeMKVLEMKEREDGGAELQVDMTEQERCFFIEFGFNQMLKQTLGMFNEQFEPKKGTKNVKSTSKSKR*
Ga0105096_1001549453300009170Freshwater SedimentMMKVLEMKEREDGGAELKIDMTEDERCFMIEFGFNQLLRNSIDKFEEQFKPKKGNKNVTRKN*
Ga0164293_1040714523300013004FreshwaterMRKVLEMKEREDGGAELQIDMTEEERCFMIEFGFNQLLRTSIDKFEKQFKPKKGNKNVTRKN*
Ga0164293_1095680513300013004FreshwaterMMKVLEMKEREDGGAELQIDMTEDERCFMIEFGFNQLLRNSIDKFEKQFKPEKGIKNVKSTSKSK*
Ga0164292_1016077513300013005FreshwaterVLEMKEREDGGAELQIDMTEEERCFMIEFGFNQLLRNSIDKFEKQFKPKKGTKNVTR*
Ga0164292_1059591233300013005FreshwaterMKVLEMKEREDGGAELQIDMTEDERCFMIEFGFNQLLRNSIDKFEKQFKPKKGTK
Ga0164292_1074135713300013005FreshwaterIDMTEDERCFMIEFGFNQLLRNSIDKFEKQFKPEKGIKNVKSTSKSK*
Ga0164294_1065995633300013006FreshwaterMKVLEMTEREDGGAELQVDMTEQERCFFIEFGFNQMLKQSLGMFNEQFESKKGTKNVKSTSKSKR*
Ga0164295_10020856103300013014FreshwaterGAELQVDMTEQERCFFIEFGFNQMLKQSLGMFNEQFESKKGTKNVKSTSKSKR*
Ga0181356_121523033300017761Freshwater LakeEEMMKVLEMKEREDGGAELQIDMTEEERCFMIEFGFNQVLRHSIDKFEKQFKPKKGNKNVTRKN
Ga0181358_119789733300017774Freshwater LakeMKVLEMKELKDGGAELQIDMTEEERCFMIEFGFNQLLRTSIDKFENQFKPKKGNKNVTRK
Ga0181357_133486213300017777Freshwater LakeGGAELQLDMTDEERCFLIEFGFNQLLRTSIDKFEKQFKPKKGIKNVKSTSKSK
Ga0181359_104502433300019784Freshwater LakeMKVLEMKEREDGGAELQIDMTEDERCFMIEFGFNQLLRNSIDKFEKQFKPEKGIKNVKSTSKSK
Ga0181359_112734933300019784Freshwater LakeMKVLEMKEREDGGAELQIDMTEEERCFMIEFGFNQVLRHSIDKFEKQFKPKKGNKNVTRK
Ga0181359_113306713300019784Freshwater LakeMKVLEMKEREDGGAELQIDMTEEERCFMIEFGFNQVLRHSIDKFEKQFKPKKGNKN
Ga0181359_120736723300019784Freshwater LakeMMKLVELKERQDGGAELQLDMTDEERCFLIEFGFNQLLRTSIDKFEKQFKPKKGIKNVKSTSKSK
Ga0211734_1035586363300020159FreshwaterMKVLEMKEREDGGAELQIDMTEDERCFMIEFGFNQLLRNSIDKFEKQFKPKKGTKNVTR
Ga0211729_1127859123300020172FreshwaterMKVLEMKEREDGGAELQIDMTEEERCFMIEFGFNQLLRNSIDKFEKQFKPKKGTKNATR
Ga0208235_104068223300020530FreshwaterMKVLEMKEREDGGAELQIDMTEDERCFMIEFGFNQLLRNSIDKFEEQFKPKKGNKNVTRK
Ga0222714_1002565093300021961Estuarine WaterMKVLEMKEREDGGADLQIDMTEEERCFMIEFGFNQLLKQSLGMFNEQFEPKKGTKNVKSTSKSKR
Ga0181353_101077213300022179Freshwater LakeMKLVEMKERKDGGADLQIDMSEEERCFMIEFGFNQLLRNTIDKFEEQFKTKKGTKNATR
Ga0181354_107450633300022190Freshwater LakeMKVLEMKEREDGGAELQIDMTEEERCFMIEFGFNQLLRNSIDKFEKQFKPEKGIKNVKST
Ga0181354_113313523300022190Freshwater LakeMKLVELKEREDGGAELQLDMTDEERCFLVEFGFNQLLLSSINKFEKQFKPNKGTKNVKSTNKSK
Ga0181354_119198123300022190Freshwater LakeMKVLEMTEREDGGAELQVDMTEQERCFFIEFGFNQMLKQSLGMFNEQFEPKKGIKNVKSTSKSKR
Ga0181351_108049843300022407Freshwater LakeGAELQLDMTDEERCFLIEFGFNQLLRTSIDKFEKQFKPKKGIKNVKSTSKSK
Ga0214921_1006031863300023174FreshwaterMKVLEMKELEDGGAELQIDMTEEERCFMIEFGFNQLLKQSLGMFNEQFEPKKGTKNVKSTSKSKR
Ga0208147_103958143300025635AqueousMKVLEMKERKDGGADLQLDMTEEERCFFIEFGFNAMLRKSLDEFNAQFVPKKG
Ga0208644_103207843300025889AqueousMKVLEMKERKDGGADLQLDMTEEERCFFIEFGFNAMLRKSLDEFNAQFVPKKGTRNVSTKSKSK
Ga0209850_100110753300026931SandMMKVLEMKEREDGGAELQIDMTEEERCFMIEFGFNQVLRHSIDKFEKQFKPKKGNKNVTRKN
Ga0208975_102536743300027659Freshwater LenticMKLVELKERQDGGAELQLDMTDKERCFLIEFGFNQLLRTSIDKFEKQFKPKKGIKNVKSTSKSK
Ga0209769_104703013300027679Freshwater LakeVLEMKEREDGGAELQIDMTEDERCFMIEFGFNQLLRNSIDKFEKQFKPEKGIKNVKSTSKSK
Ga0209444_1000986683300027756Freshwater LakeIDMTEDERCFMIEFGFNQLLRNSIDKFEKQFKPEKGIKNVKSTSKSK
Ga0209296_108376633300027759Freshwater LakeMKVLEMKEREDGGAELQVDMTEQERCFFIEFGFNQMLKQSLGMFNEQFEPKKGTKNVKSTSKSKR
Ga0209246_1009046543300027785Freshwater LakeMKLVELKERQDGGAELQLDMTDEERCFLIEFGFNQLLRTSIDKFEKQFKPKKGIKNVKSTSKSK
Ga0209107_1004833623300027797Freshwater And SedimentMMKLVELKERQDGGAELQLDMTDEERCFLIEFGFNQLLRTSIDKFEKQFKPKKGIKYAFKLFITTVLPF
Ga0209229_1040020113300027805Freshwater And SedimentNSEEIMKVLEMKEREDGGAELQIDMTEDERCFMIEFGFNQLLRNSIDKFEKQFKPKKGTKNVTR
(restricted) Ga0247844_118083123300028571FreshwaterMKVLEMKEREDGGAELQIDMTEEERCFMIEFGFNQLLRNSIDKFEEQFKPKKGTKNVTRK
Ga0315907_1072394233300031758FreshwaterMKVLEMKERKDGGADLQIDMTEEERCFMIEYGFNAMLRATIDKFNEQFIPPKGTKNVKSTSKSKR
Ga0315900_1014570953300031787FreshwaterLEMKEREDGGAELQVDMTEQERCFFIEFGFNQMLKQSLGMFNEQFEPKKGTKNVKSTSKSKR
Ga0315900_1055075713300031787FreshwaterMKVLEMKERKDGGADLQIDMTEDERCFFIEFGFNQMLKQTLGMFNEQFEPKKGIKNVKSTSKSKR
Ga0315900_1099120333300031787FreshwaterKVLEMKEREDGGAELQIDMTEEERCFMIEFGFNQVLRHSIDKFEKQFKPKKGNKNVTRKN
Ga0315909_1043530533300031857FreshwaterMKVLEMTEREDGGAELQVDMTEQERCFFIEFGFNQMLKQSLGMFNEQFEPKKGTKNVKSTSKSKR
Ga0315904_1012984533300031951FreshwaterMKILEMKERKDGGADLQIDMSEEERCFMIEYGFNAMLRKTIDQFNDQFKTKKGTKNATSK
Ga0315904_1018852253300031951FreshwaterDGGAELQVDMTEQERCFFIEFGFNQMLKQSLGMFNEQFEPKKGTKNVKSTSKSKR
Ga0315904_1021231643300031951FreshwaterMKILEMKERKDGGADLQIDMTEEERCFMIEYGFNAMLRKTIDQFNEQFKPKKGTKNASCK
Ga0315904_1038338833300031951FreshwaterMKVLEMKELKDGGAELQIDMTEEERCFMIEFGFNQLLRNSIDKFEKQFKPKKGNKNVTRK
Ga0315904_1099866833300031951FreshwaterRMKVLEMKERKDGGADLQLDMTEEERCFFIEFGFNAMLRKSLDEFNAQFVPKKGTRNVSTKSKSK
Ga0315904_1135334423300031951FreshwaterMKVLEMKEREDGGAELQVDMTEQERCFFIEFGFNQMLKQSLGMFNEQFEPQKGTKNVKSTSKSKR
Ga0315901_1078385423300031963FreshwaterMKVLEMTEREDGGAELQVDMTEQERCFFIEFGFNQMLKQSLGMFNEQFEPKKGTKNVKST
Ga0315901_1104325623300031963FreshwaterMKVLEMKELKDGGAELQIDMTEEERCFMIEFGFNQLLRNSIDKFEKQFKTKKGNKNVTRK
Ga0315906_1054616733300032050FreshwaterDGGAELQIDMTEEERCFMIEFGFNQLLRNSIDKFEKQFKTKKGNKNVTRKN
Ga0315906_1059379033300032050FreshwaterMKVIEMKERKDGGADLQVDMTEEERCFMIEYGFNAMLRATIDKFNEQFTPPKGTKNVKSTSKSK
Ga0315906_1125292013300032050FreshwaterMKVLEMKEREDGGAELQIDMTEEERCFMIEFGFNQLLRTSIDKFEKQFKPKKGIK
Ga0334977_0467525_388_5763300033978FreshwaterMMKVLEMKEREDGGAELQIDMTEDERCFMIEFGFNQLLRNSIDKFEKQFKPKKGTKNVTRKN
Ga0334979_0133512_1189_13863300033996FreshwaterMMKVLEMKEREDGGAELQIDMTEDERCFMIEFGFNQLLRNSIDKFEKQFKPEKGIKNVKSTSKSK
Ga0334979_0532846_399_5873300033996FreshwaterMMKVLEMKEREDGGAELQIDMTEEERCFMIEFGFNQLLRTSIDKFEKQFKPKKGNKNVTRKN
Ga0334987_0255149_304_4923300034061FreshwaterMMKVLEMKEREDGGAELQIDMTEEERCFMIEFGFNQLLRTSIDKFEKQFKPKKGIKNVTRKN
Ga0334995_0092540_701_8893300034062FreshwaterMMKVLEMKEREDGGAELQIDMTEDERCFMIEFGFNQLLRNSIDKFEEQFKPKKGNKNVTRKN
Ga0335013_0200957_499_6873300034284FreshwaterMMKVLEMKEREDGGAELQIDMTEDERCFMIEFGFNQLLRNSIDKFEKQFKPKKGNKNVTRKN
Ga0335048_0529965_3_1733300034356FreshwaterMKELKDGGAELQIDMTEEERCFMIEFGFNQVLRHSIDKFEKQFKPKKGNKNVTRKN


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