Scaffold Ga0114340_1016735

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1016735
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3501
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001477	Metagenome / Metatranscriptome	687	Y
F003212	Metagenome / Metatranscriptome	500	Y
F018135	Metagenome	236	Y
F036551	Metagenome	169	Y
F040479	Metagenome	161	Y
F086805	Metagenome	110	Y
F093237	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_101673510	F036551	GGAG	MDTMDILRALSTEARECEICGSGSWRILHAGDESNCECEGECLRVCDNPLLEYGCDGVAILINEEASK*
Ga0114340_101673511	F003212	AGGAGG	MKDRYLVTLEIETYDGDPRWWDWEKLSTGEDVIKVIESQWQGRVLPKSEGESNE*
Ga0114340_101673513	F001477	GGA	MGDSNIYTIHPRKSELILLYEVVDESGRAEWGGANAEHAIQWLSLAPREARILVSAWDSDEEDAHLVGQTIDITDIVRAASL*
Ga0114340_101673516	F040479	AGG	LLAQETLRANQEAQLSELLSSLENVVENLNYKSFTLYDTLNTVIEEVSAVLSGTQ
Ga0114340_10167353	F086805	AGGAGG	MRELSKRGNLVAGIAIGLLIAGLVWVSGNVWITEEGGICLGSMLKCM*
Ga0114340_10167354	F018135	AGG	MTIERVRHSGAYVLSQFVGEGAGEYLFTRTYYFYTLREAKRLFKIALAEEAK*
Ga0114340_10167357	F093237	GAGG	MSYKYTLAEAGKMTNQELLNALLAREVAPRTIVGTGYINARQVAIEYLQGEIAKEGEGK*