Scaffold Ga0114340_1011350

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1011350
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6380
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000368	Metagenome / Metatranscriptome	1223	Y
F003539	Metagenome / Metatranscriptome	480	Y
F025943	Metagenome / Metatranscriptome	199	Y
F030732	Metagenome	184	Y
F095139	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_101135011	F000368	AGGAGG	MEQFKQLSLTWFRAAAASAIALFLAGEQDLKTLAMAALAGFAGPVLKWLDSSATEFGRGSK*
Ga0114340_101135014	F030732	AGG	MWDEDTRAVGWYDLAQECIECGTVTTAPTEIDGDDCA*
Ga0114340_101135015	F095139	N/A	MSSRPKIQTNNQIILCWCDGGATDGKFTEGVVYAALKSSLPITSAMRVQGNQIGRQRQQALDFWYDKTDFDWILWVDSDIVLNEEALQAVWNAADPIDRPVVTGTYFISKENEGSLMSPYPAVFNWTEDDYKISYVHPLPVNAVIKVGSAGFGFVLMHRNAVTAMRKVHGAVPYFNETGVGEQFVSEDINFFRLMAKAAVPLYTHTGALVKHMKRFALDVEYYKLYWNSKSERP*
Ga0114340_101135016	F003539	GAGG	MNYIEEYNQLVQQLAAEYAKRYTMLERDDIGQELWVWFVGHPRKYKEWSTLEQKDRDKLIAKSLRNAALKFCEREKARKIGYDTSDLYYYDVSVVEAFLPSIIGDTYEIPTKIQDLNAKFGSGAASDGNNWLSLRSDIASAFYKLSEQKQNILRLRFSVDSPDWTALSKDMDSTPDGARMKVQRALNSLVKHLGGWKPYHEQDNQEDTAVSQSTDVEQTEDTDE*
Ga0114340_10113505	F025943	AGGAG	MSKLFAVVENNKVVNIVVGVENEVVAANPGKYIEYTNGWDYNNGIDGGDFFPLPITE*