Scaffold Ga0114340_1009071

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1009071
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5031
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F002071	Metagenome / Metatranscriptome	596	Y
F003663	Metagenome / Metatranscriptome	474	Y
F005741	Metagenome / Metatranscriptome	391	Y
F006744	Metagenome / Metatranscriptome	365	Y
F017995	Metagenome / Metatranscriptome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100907113	F017995	GGA	MAKMKEYIEIIAANCDECGGAGFLFFGDERNYDVEPCACVDEIADELTVDWVNE*
Ga0114340_100907114	F006744	AGG	MNLDEFKKHVIAQREASKAQALSVLSATITTQPNERENLNG*
Ga0114340_100907115	F000447	GAG	MGYIEIFRMDNEGAGWVDLSEASPDELFNIELGLLDEGAFE*
Ga0114340_10090712	F005741	AGGA	MRNRFRIEIYDANKANDLTMYSEQGVDKEYLTELVFSNLRRFNGKVRAYVYDSVKKKKITAMFLNEETVASVNK*
Ga0114340_10090714	F002071	AGGA	MLEIGQTFTTTQTGITGIIKAVDNHPSGVNRVLLDVNGTERWTSVSAE*
Ga0114340_10090716	F003663	AGGTGG	MLSTATALLDATKDSMFDEDIMGLAGELHTRRNELSDEIFAKYLFMYSSALSAKVADSITKVLLTEQEMSDLCATIDEMENLSETILEENE*